YRC Public Data Repository - Protein Structure Prediction

Protein:	sfr1
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfr1.

Description	E-value	Query Range	Subject Range
gi\|1236255 - gi\|1236255\|dbj\|BAA12180.1\| unnamed protein product [Schizosaccharomyces pombe]	304.0	[0..1]	[215..1]
swi2 - Swi5 complex subunit Swi2 SWI2_SCHPO - Mating-type switching protein swi2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi2 PE...	271.0	[0..46]	[297..490]
gi\|49085692, gi\|... - gi\|67517059\|ref\|XP_658414.1\| hypothetical protein AN0810.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	250.0	[0..81]	[297..853]
gi\|32422649, gi\|... - gi\|32422649\|ref\|XP_331768.1\| hypothetical protein [Neurospora crassa], gi\|28927512\|gb\|EAA36464.1\| hy... gi\|85119723 - gi\|85119723\|ref\|XP_965700.1\| hypothetical protein [Neurospora crassa OR74A]	190.0	[0..87]	[249..938]
gi\|39943060, gi\|... - gi\|39943060\|ref\|XP_361067.1\| hypothetical protein MG03610.4 [Magnaporthe grisea 70-15], gb\|EAA52015....	182.0	[0..87]	[249..835]
gi\|38567137 - gi\|38567137\|emb\|CAE76432.1\| hypothetical protein [Neurospora crassa]	173.0	[0..87]	[249..90]
gi\|83767527 - gi\|83767527\|dbj\|BAE57666.1\| unnamed protein product [Aspergillus oryzae] gi\|169770397 - gi\|169770397\|ref\|XP_001819668.1\| hypothetical protein [Aspergillus oryzae RIB40]	163.0	[0..93]	[297..745]
gi\|115492281, gi... - gi\|115492281\|ref\|XP_001210768.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	135.0	[0..93]	[289..10]
gi\|70996166, gi\|... - gi\|70996166\|ref\|XP_752838.1\| SEL1L [Aspergillus fumigatus Af293], gi\|66850473\|gb\|EAL90800.1\| SEL1L [...	121.0	[0..99]	[274..850]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTINSELN ENATSQCKED LKVSLSESDL RDSQGQLGIE NPPKCNNSGN HSDNLGFIEQ  60
   61 SETVHPENEK ALTPDLRDTK IHTSLPITTP FSKKRAREAK NILLKPFKSP LRQTASPQVA 120
  121 DTNLKPSLAV TNLNSDETNT SSEPVTSPL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.965
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [150-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTTPNSIKRQ KRLFKSPISN CLNPKSDPEI TQLLSRRLKL EKEVRNLQEQ LITAETARKV  60
   61 EAKNEDKDLQ TLIQKWKNAA QQAAEVLFKP MAERIRLAGG VTQSFRIEEG ENKGQIQEVR 120
  121 TEFTMSMFLN QFGVPVHLMS FDEENGDWKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits