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Protein Overview: SPBC1A4.09

General Information:
Name(s) found: SPBC1A4.09 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • pseudouridine synthase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 680 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: tRNA pseudouridine synthesis [ISS]
    snRNA pseudouridine synthesis [ISS]
    enzyme-directed rRNA pseudouridine synthesis [ISS]
    Molecular Function: RNA binding [IEA]
    pseudouridine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQENHVDVP RKRIRIDQSE SSRNLERNGL EDEANAPSDL SGQKFYMTES DVGIDAFLNP  60
   61 NLPSIDGIIK ARFTDFAVFE VDTDGNIVHL TDMEAHDPIL SKATGDKETE DAKDSSNQDI 120
  121 SNDQKAPSFK EQEPATLPIL PNDLQSIIPK GIGNEFIQSL HKLSVGEITD PISLILPENT 180
  181 PPMDKGQRTI LHQFIRNNFS GLESSTKGNG TFTVSKTTRK NQPRSRRDPR LSWKALGGEY 240
  241 CHFHLYKENR DSMDCLGKIA RLLKVPTRTL SIAGTKDRRG VTCQRVAIHH VRASRLAQLN 300
  301 SGSLKNSTYG FLLGNYSYKN SNLRLGDLKG NEFHIVVRNV ITPKEKVVEA LNSLKEHGFI 360
  361 NYFGLQRFGT SSVGTHTIGV RLLQSDWKGA VDLILSPRPE HTGSVKEAID LWHSTHDAEA 420
  421 SLRILPRRMI AESSILETWS RSGNQTDYLG AFQRIPRHLR SIYPHAYQSY VWNRVASWRI 480
  481 KNLGDRPVVG DLVYSTESNG LSQKSPIVDP EAPDLLEDLP VSSKLSARPI EEDEVNNFSI 540
  541 YDIVLPLPGR NVIYPKNETF DIYKSVMNEA SLDPLNMSRK DRELSLPGDY RKLLVRPENM 600
  601 EFNFIKYDNM EQQLILTDKD RLENRSISVS SEVGKHTAVT LKFVLPSSAY ATMALREALR 660
  661 TATASGDQRM LMPAVLKDSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 2.049996 View MSA. No confident structure predictions are available.
    2 View Details [134..206] deduced N/A No confident structure predictions are available.
    3 View Details [207..680] PSI-BLAST 102.0 Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle