| Protein: | SPBC1A4.09 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 680 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1A4.09.
| Description | E-value | Query Range |
Subject Range |
|
|
628.0 | [0..40] | [677..153] |
|
|
625.0 | [0..21] | [664..2] |
|
|
623.0 | [0..40] | [677..168] |
|
|
622.0 | [0..40] | [677..97] |
|
|
622.0 | [0..40] | [677..102] |
|
|
621.0 | [0..40] | [677..101] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MSQENHVDVP RKRIRIDQSE SSRNLERNGL EDEANAPSDL SGQKFYMTES DVGIDAFLNP 60
61 NLPSIDGIIK ARFTDFAVFE VDTDGNIVHL TDMEAHDPIL SKATGDKETE DAKDSSNQDI 120
121 SNDQKAPSFK EQE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [134-206] |
1 11 21 31 41 51
| | | | | |
1 PATLPILPND LQSIIPKGIG NEFIQSLHKL SVGEITDPIS LILPENTPPM DKGQRTILHQ 60
61 FIRNNFSGLE SST
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [207-680] |
1 11 21 31 41 51
| | | | | |
1 KGNGTFTVSK TTRKNQPRSR RDPRLSWKAL GGEYCHFHLY KENRDSMDCL GKIARLLKVP 60
61 TRTLSIAGTK DRRGVTCQRV AIHHVRASRL AQLNSGSLKN STYGFLLGNY SYKNSNLRLG 120
121 DLKGNEFHIV VRNVITPKEK VVEALNSLKE HGFINYFGLQ RFGTSSVGTH TIGVRLLQSD 180
181 WKGAVDLILS PRPEHTGSVK EAIDLWHSTH DAEASLRILP RRMIAESSIL ETWSRSGNQT 240
241 DYLGAFQRIP RHLRSIYPHA YQSYVWNRVA SWRIKNLGDR PVVGDLVYST ESNGLSQKSP 300
301 IVDPEAPDLL EDLPVSSKLS ARPIEEDEVN NFSIYDIVLP LPGRNVIYPK NETFDIYKSV 360
361 MNEASLDPLN MSRKDRELSL PGDYRKLLVR PENMEFNFIK YDNMEQQLIL TDKDRLENRS 420
421 ISVSSEVGKH TAVTLKFVLP SSAYATMALR EALRTATASG DQRMLMPAVL KDSI
|
| Detection Method: | |
| Confidence: | 102.0 |
| Match: | 1z2zA |
| Description: | Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1 |
Matching Structure (courtesy of the PDB): |
|
