General Information: |
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Name(s) found: |
ssn6 /
SPBC23E6.09
[Sanger Pombe]
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Description(s) found:
SHOW ONLY BEST |
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Organism: | Schizosaccharomyces pombe |
Length: | 1102 amino acids |
Gene Ontology: |
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Cellular Component: |
nucleus
[IDA][ISS]
protein complex [RCA] |
Biological Process: |
negative regulation of transcription
[ISS]
positive regulation of transcription [IC] nucleosome positioning [ISS] chromatin silencing [ISS] |
Molecular Function: |
transcription coactivator activity
[ISS]
transcription corepressor activity [TAS] general transcriptional repressor activity [ISS] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MPQSQVATAS PSQNAQPNHG MGSKVLSSDP NASLPPQTAY YASPLHANSV SLPPSHLPRS 60 61 TLHPLLSQQQ QPAQQSPSLG PAQQNIQQPP SVSIASQPHY AEAIVPIQQV LQPQQYRQLP 120 121 PNMVAATNAP QQHPQLQRMM PILSSNQPIQ QLPLPNQASP YIPVPLQQQQ QSQPQQQPQQ 180 181 QQHQQPQQPQ PPQQPLQQQQ QQRQLHSGIQ QPVSTIVSQN GTYYSIPAVN HPMAGQPIAI 240 241 APVPAPNQAA LPPIPPQALP ANGTPNTLAS PVTLPAANSA VQNAQPVPMT SSPAMAVVPQ 300 301 NKTAATSTLA AQQGANVLPP NAPESVRHLI SLNEETWIQI GRLAELFDDQ DKALSAYESA 360 361 LRQNPYSIPA MLQIATILRN REQFPLAIEY YQTILDCDPK QGEIWSALGH CYLMQDDLSR 420 421 AYSAYRQALY HLKDPKDPKL WYGIGILYDR YGSHEHAEEA FMQCLRMDPN FEKVNEIYFR 480 481 LGIIYKQQHK FAQSLELFRH ILDNPPKPLT VLDIYFQIGH VYEQRKEYKL AKEAYERVLA 540 541 ETPNHAKVLQ QLGWLCHQQS SSFTNQDLAI QYLTKSLEAD DTDAQSWYLI GRCYVAQQKY 600 601 NKAYEAYQQA VYRDGRNPTF WCSIGVLYYQ INQYQDALDA YSRAIRLNPY ISEVWYDLGT 660 661 LYESCHNQIS DALDAYQRAA ELDPTNPHIK ARLQLLRGPN NEQHKIVNAP PSNVPNVQTA 720 721 KYINQPGVPY SNVPVAQLSG NWQPPHLPQA QLPSATGQSG VVQQPYQTQP SVTNNNVATQ 780 781 PVIASTVPVQ TAAPSSQTAV PQTIHQSNAF TPRGKHASGS RNSISSTKSP QHKLSDQPRS 840 841 RNNSISNVSH RERSNSVSSK SRETRTSASN ESDPKKSTQR DSSKKLENST VVSGSPSSSS 900 901 KSDAAKSIKP QKPEPALKPV EGTADPKSTK RNHQETEKTA DTDVSSTEPV KRQKTADVND 960 961 DVGEEEVKQS VSEQVDSAQL TSEPKSESLP KSPEEKSDDT SNDVTTENTN DINGDSNMDN1020 1021 VATVDKSTDA VDTSTATVAA TTTTAEEELP QKESQERSSP SPENQDSTPL APKSVSPKQA1080 1081 ARTLDIDENY DDDEGEKETV SV |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
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Domains predicted:
# | Region(s) | Method | Confidence | Match Description | |
1 | View Details | [1..202] | 1.0 | No description for 2j63A was found. | |
2 | View Details | [203..297] | 95.522879 | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. | |
3 | View Details | [298..700] | 39.0 | No description for 2gw1A was found. | |
4 | View Details | [701..810] | 10.39794 | Protein farnesyltransferase alpha-subunit | |
5 | View Details | [811..988] | 1.123991 | View MSA. No confident structure predictions are available. | |
6 | View Details | [989..1102] | 3.121991 | View MSA. No confident structure predictions are available. |
Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.95 |
Source: Reynolds et al. (2008)