| Protein: | ssn6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1102 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssn6.
| Description | E-value | Query Range |
Subject Range |
|
|
491.0 | [0..214] | [786..682] |
|
|
454.0 | [0..217] | [768..486] |
|
|
438.0 | [0..219] | [790..341] |
|
|
435.0 | [0..95] | [758..16] |
|
|
421.0 | [0..95] | [758..2] |
|
|
419.0 | [0..219] | [788..697] |
|
|
418.0 | [0..173] | [779..1] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MPQSQVATAS PSQNAQPNHG MGSKVLSSDP NASLPPQTAY YASPLHANSV SLPPSHLPRS 60
61 TLHPLLSQQQ QPAQQSPSLG PAQQNIQQPP SVSIASQPHY AEAIVPIQQV LQPQQYRQLP 120
121 PNMVAATNAP QQHPQLQRMM PILSSNQPIQ QLPLPNQASP YIPVPLQQQQ QSQPQQQPQQ 180
181 QQHQQPQQPQ PPQQPLQQQQ QQ
|
| Detection Method: |  |
| Confidence: | 1.0 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [203-297] |
1 11 21 31 41 51
| | | | | |
1 RQLHSGIQQP VSTIVSQNGT YYSIPAVNHP MAGQPIAIAP VPAPNQAALP PIPPQALPAN 60
61 GTPNTLASPV TLPAANSAVQ NAQPVPMTSS PAMAV
|
| Detection Method: | |
| Confidence: | 95.522879 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [298-700] |
1 11 21 31 41 51
| | | | | |
1 VPQNKTAATS TLAAQQGANV LPPNAPESVR HLISLNEETW IQIGRLAELF DDQDKALSAY 60
61 ESALRQNPYS IPAMLQIATI LRNREQFPLA IEYYQTILDC DPKQGEIWSA LGHCYLMQDD 120
121 LSRAYSAYRQ ALYHLKDPKD PKLWYGIGIL YDRYGSHEHA EEAFMQCLRM DPNFEKVNEI 180
181 YFRLGIIYKQ QHKFAQSLEL FRHILDNPPK PLTVLDIYFQ IGHVYEQRKE YKLAKEAYER 240
241 VLAETPNHAK VLQQLGWLCH QQSSSFTNQD LAIQYLTKSL EADDTDAQSW YLIGRCYVAQ 300
301 QKYNKAYEAY QQAVYRDGRN PTFWCSIGVL YYQINQYQDA LDAYSRAIRL NPYISEVWYD 360
361 LGTLYESCHN QISDALDAYQ RAAELDPTNP HIKARLQLLR GPN
|
| Detection Method: | |
| Confidence: | 39.0 |
| Match: | 2gw1A |
| Description: | No description for 2gw1A was found. |
|
Region A: Residues: [701-810] |
1 11 21 31 41 51
| | | | | |
1 NEQHKIVNAP PSNVPNVQTA KYINQPGVPY SNVPVAQLSG NWQPPHLPQA QLPSATGQSG 60
61 VVQQPYQTQP SVTNNNVATQ PVIASTVPVQ TAAPSSQTAV PQTIHQSNAF
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1jcqA |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [811-988] |
1 11 21 31 41 51
| | | | | |
1 TPRGKHASGS RNSISSTKSP QHKLSDQPRS RNNSISNVSH RERSNSVSSK SRETRTSASN 60
61 ESDPKKSTQR DSSKKLENST VVSGSPSSSS KSDAAKSIKP QKPEPALKPV EGTADPKSTK 120
121 RNHQETEKTA DTDVSSTEPV KRQKTADVND DVGEEEVKQS VSEQVDSAQL TSEPKSES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [989-1102] |
1 11 21 31 41 51
| | | | | |
1 LPKSPEEKSD DTSNDVTTEN TNDINGDSNM DNVATVDKST DAVDTSTATV AATTTTAEEE 60
61 LPQKESQERS SPSPENQDST PLAPKSVSPK QAARTLDIDE NYDDDEGEKE TVSV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
