Protein Overview: swd1

General Information:
Name(s) found:	swd1 / SPAC23H3.05c [Sanger Pombe]
Description(s) found: SHOW ONLY BEST	pir\|\|T38298 WD repeat protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR] gi\|4884474\|emb\|CAB16241.2\| Set1C complex subunit Swd1 [Schizosaccharomyces pombe] [NCBI NR] gi\|24638392\|sp\|O42858.2\|SWD1_SCHPO RecName: Full=Set1 complex component swd1; Short=Set1C component swd1; AltName: Full=COMPASS component swd1; AltName: Full=Complex proteins associated with set1 protein swd1 [NCBI NR] gi\|19114707\|ref\|NP_593795.1\| COMPASS complex subunit Swd1 [Schizosaccharomyces pombe] [NCBI NR] COMPASS complex subunit Swd1 [Sanger Pombe] (O42858) Hypothetical WD-repeat protein C23H3.05c in chromosome I [Swiss-Prot] Set1 complex component swd1 OS=Schizosaccharomyces pombe GN=swd1 PE=2 SV=2 [Swiss-Prot] WD REPEAT PROTEIN: O42858; [pompepVF.fasta] Hypothetical WD-repeat protein C23H3.05c in chromosome I [pompep4896] \|swd1\|\|SET1 complex (TAP) (PMID 12488447) [pompepnew.fasta] \|swd1\|\|SET1 complex (TAP) (PMID 12488447)\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [pombe041504.fasta] WD repeat protein [Schizosaccharomyces pombe]gi\|4884474\|emb\|CAB16241.2\| SPAC23H3.05c [Schizosaccharomyces pombe]gi\|24638392\|sp\|O42858\|YEP5_SCHPO Hypothetical WD-repeat protein C23H3.05c in chromosome Igi\|7493712\|pir\|\|T38298 WD repeat protein - fission [nrdb_11152004_Chlamydomonas] \|swd1\|\|WD repeat protein\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [pompep2242005.fasta] \|swd1\|\|Set1C complex subunit Swd1\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta] Set1 complex component swd1 (Set1C component swd1) (COMPASS component swd1) (Complex proteins associated with set1 protein swd1) [nr-271106-contam.fasta] hypothetical protein SPAC23H3.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] SPAC23H3.05c [Schizosaccharomyces pombe] [nr-271106-contam.fasta] Set1 complex component swd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd1 PE=3 SV=2 [uniprot_sprot.fasta.20160308]
Organism:	Schizosaccharomyces pombe
Length:	398 amino acids
Gene Ontology:
Cellular Component:	Set1C/COMPASS complex [IDA] nucleus [IDA] nuclear chromatin [IC] cytosol [IDA]
Biological Process:	chromatin remodeling [IC] histone methylation [IMP] histone H3-K4 methylation [IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLELLDPFS IPDYPEALTT TLKHGHATSI RFSTNGYHLA SGLVNGSVVI WDLSTFSVSR  60
   61 VLTGHTRAIQ SVCWSSCDRF LLTASRDWKC ILWDLRDGSI VYQVVLSAPV WSASLHPHKI 120
  121 NTFVASLLDE SPQLIIVDDG IPKHKYLPTN PDIDENYSDR RNRSKHVTLV SFFHPSGEYI 180
  181 LSGTSKGWFH VIDASTTKIR SSHRITSQSI KQIRLSFCKR FLIFNSTDRV IRTVSIQDLD 240
  241 NPEVEHKFQD VVNRLQWNSC GFSQTGEFVF ATTYQMAHAI YVWERGMGSL VKILEGPKEE 300
  301 LVDVDWHPVF PCVASVGLDS GSIYIWAVEQ KESWSAFAPD FQELEENIEY EEPEDEFDIH 360
  361 DETGKSEEEE YFTSVVKILP HDSSAEQPFV MPPTLSSS

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..398]	PSI-BLAST	55.522879	No description for 2gnqA was found.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.80

Protein Overview: swd1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: