YRC Public Data Repository - Protein Structure Prediction

Protein:	swd1
Organism:	Schizosaccharomyces pombe
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swd1.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	353.0	[0..2]	[395..1195]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	343.0	[0..3]	[395..592]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	341.0	[0..2]	[395..1151]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	333.0	[0..2]	[395..864]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	331.0	[0..2]	[397..971]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLELLDPFS IPDYPEALTT TLKHGHATSI RFSTNGYHLA SGLVNGSVVI WDLSTFSVSR  60
   61 VLTGHTRAIQ SVCWSSCDRF LLTASRDWKC ILWDLRDGSI VYQVVLSAPV WSASLHPHKI 120
  121 NTFVASLLDE SPQLIIVDDG IPKHKYLPTN PDIDENYSDR RNRSKHVTLV SFFHPSGEYI 180
  181 LSGTSKGWFH VIDASTTKIR SSHRITSQSI KQIRLSFCKR FLIFNSTDRV IRTVSIQDLD 240
  241 NPEVEHKFQD VVNRLQWNSC GFSQTGEFVF ATTYQMAHAI YVWERGMGSL VKILEGPKEE 300
  301 LVDVDWHPVF PCVASVGLDS GSIYIWAVEQ KESWSAFAPD FQELEENIEY EEPEDEFDIH 360
  361 DETGKSEEEE YFTSVVKILP HDSSAEQPFV MPPTLSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits