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Protein Overview: SPAC1B3.02c

General Information:
Name(s) found: SPAC1B3.02c [Sanger Pombe]
Description(s) found:
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  • pir||T38020 hypothetical protein SPAC1B3.02c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3183361|sp|O13868.1|ELOF1_SCHPO RecName: Full=Transcription elongation factor 1 homolog [NCBI NR]
  • gi|2330736|emb|CAB11231.1| transcription elongation factor, Elf1 family [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115698|ref|NP_594786.1| transcription elongation factor, Elf1 family [Schizosaccharomyces pombe] [NCBI NR]
  • transcription elongation factor, Elf1 family [Sanger Pombe]
  • (O13868) Hypothetical UPF0222 protein C1B3.02c in chromosome I [Swiss-Prot]
  • Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SIMILAR TO S. CEREVISIAE YKL160W; CONTAINS PFAM-B_29587: O13868; [pompepVF.fasta]
  • Hypothetical protein C1B3.02c in chromosome I [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • Hypothetical UPF0222 protein C1B3.02c in chromosome I [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2330736|emb|CAB11231.1| SPAC1B3.02c [Schizosaccharomyces pombe]gi|3183361|sp|O13868|YE12_SCHPO Hypothetical UPF0222 protein C1B3.02c in chromosome Igi|7490909|pir||T38020 hypothetical protein SPAC1B3.0 [nrdb_11152004_Chlamydomonas]
  • |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13868) Hypothetical protein C1B3.02c in chromosome I [pompep4896_normal_reversed]
  • |||transcription elongation factor, Elf1 family|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Transcription elongation factor 1 homolog [nr-271106-contam.fasta]
  • SPAC1B3.02c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC1B3.02c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||transcription elongation factor, Elf1 family |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 107 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: regulation of RNA elongation [ICLink to PubMed article]
    chromatin organization [ISSLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [ISSLink to PubMed article]
    RNA polymerase II transcription elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKAKAKV KPKRRAPPLD TTFTCLFCNH EKSVSCSLDK QSGVGNLHCK ICGQSHQCLI  60
   61 TALSAPIDVY SDWIDACDAV ANQAKEVDNI NDQEAYSPEA AYEEEKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] PSI-BLAST 29.0 Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription elongation regulator activity
    		•  4.34964147855173 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.36253105801209 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  2.94226997600631 bayes_pls_golite062009
  • RNA polymerase activity
    		•  2.94226997600631 bayes_pls_golite062009
  • binding
    		•  2.58311326284197 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.8086747972572 bayes_pls_golite062009
  • DNA binding
    		•  1.76634962183736 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.57988053581899 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.28009006260418 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.944924567731798 bayes_pls_golite062009
  • protein binding
    		•  0.764662055834369 bayes_pls_golite062009
  • positive transcription elongation factor activity
    		•  0.54769726775722 bayes_pls_golite062009
  • catalytic activity
    		•  0.434839928397784 bayes_pls_golite062009
  • RNA polymerase II transcription elongation factor activity
    		•  0.33828634213987 bayes_pls_golite062009
  • DNA primase activity
    		•  0.275932599899815 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.240481799431949 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.50

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle