YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B3.02c
Organism:	Schizosaccharomyces pombe
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.02c.

Description	E-value	Query Range	Subject Range
gi\|238880026 - gi\|238880026\|gb\|EEQ43664.1\| transcription elongation factor 1 [Candida albicans WO-1] orf19.6623, orf1... - orf19.6623 CGDID:CAL0003980 Assembly 19, Contig19-10251 (3081, 2695) CDS, reverse complemented, tran... gi\|68488889, gi\|... - gi\|68488889\|ref\|XP_711689.1\| hypothetical protein CaO19.6623 [Candida albicans SC5314], gi\|68487892\|...	153.0	[0..1]	[97..1]
gi\|125538787 - gi\|125538787\|gb\|EAY85182.1\| hypothetical protein OsI_06540 [Oryza sativa Indica Group] ELOF1_ORYSA, U22... - (Q8LHP0) Hypothetical UPF0222 protein P0519E12.3, Transcription elongation factor 1 homolog - Oryza ... ELOF1_ORYSJ - Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1	136.0	[0..1]	[82..1]
ELOF1_ARATH - Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1	133.0	[0..1]	[81..1]
ELF1_YEAST - Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 P... ELF1 - Transcription elongation factor that contains a conserved zinc finger domain; implicated in the main... gi\|190409683 - gi\|190409683\|gb\|EDV12948.1\| transcription elongation factor 1 [Saccharomyces cerevisiae RM11-1a]	133.0	[0..1]	[107..1]
gi\|195556994, gi... - gi\|195556994\|ref\|XP_002077227.1\| GD25376 [Drosophila simulans], gi\|194202320\|gb\|EDX15896.1\| GD25376 ... gi\|195359298, gi... - gi\|195359298\|ref\|XP_002045341.1\| GM19294 [Drosophila sechellia], gi\|194129331\|gb\|EDW51374.1\| GM19294... gi\|220959684 - gi\|220959684\|gb\|ACL92385.1\| CG40228-PC [synthetic construct] FBpp0306002, CG4... - This gene is referred to in FlyBase by the symbol Dmel\CG40228 (CG40228, FBgn0063670). It is a prote...	132.0	[0..1]	[81..1]
gi\|187030608, gi... - gi\|39582724\|emb\|CAE65930.1\| Hypothetical protein CBG11103 [Caenorhabditis briggsae], gi\|187030608\|em...	132.0	[0..1]	[82..1]
gi\|49525268 - gi\|49525268\|emb\|CAG58881.1\| unnamed protein product [Candida glabrata] gi\|50287065, gi\|... - gi\|50287065\|ref\|XP_445962.1\| unnamed protein product [Candida glabrata], gi\|49525268\|emb\|CAG58881.1\|...	132.0	[0..1]	[81..1]
CE22483 - status:Confirmed UniProt:Q9XVZ8 protein_id:CAA22454.1	132.0	[0..1]	[82..1]
gi\|44983882 - gi\|44983882\|gb\|AAS52918.1\| AER237Wp [Ashbya gossypii ATCC 10895] gi\|45190840, gi\|... - gi\|45190840\|ref\|NP_985094.1\| AER237Wp [Ashbya gossypii ATCC 10895], gi\|44983882\|gb\|AAS52918.1\| AER23...	131.0	[0..1]	[82..1]
gi\|91090556 - gi\|91090556\|ref\|XP_971424.1\| PREDICTED: similar to CG40228 CG40228-PC [Tribolium castaneum]	131.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKAKAKV KPKRRAPPLD TTFTCLFCNH EKSVSCSLDK QSGVGNLHCK ICGQSHQCLI  60
   61 TALSAPIDVY SDWIDACDAV ANQAKEVDNI NDQEAYSPEA AYEEEKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1wiiA
Description:	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription elongation regulator activity	4.34964147855173	bayes_pls_golite062009
transcription regulator activity	3.36253105801209	bayes_pls_golite062009
DNA-directed RNA polymerase activity	2.94226997600631	bayes_pls_golite062009
RNA polymerase activity	2.94226997600631	bayes_pls_golite062009
binding	2.58311326284197	bayes_pls_golite062009
nucleic acid binding	1.8086747972572	bayes_pls_golite062009
DNA binding	1.76634962183736	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.57988053581899	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.28009006260418	bayes_pls_golite062009
nucleotidyltransferase activity	0.944924567731798	bayes_pls_golite062009
protein binding	0.764662055834369	bayes_pls_golite062009
positive transcription elongation factor activity	0.54769726775722	bayes_pls_golite062009
catalytic activity	0.434839928397784	bayes_pls_golite062009
RNA polymerase II transcription elongation factor activity	0.33828634213987	bayes_pls_golite062009
DNA primase activity	0.275932599899815	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.240481799431949	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: