Protein Overview: SPAC1B3.02c

General Information:
Name(s) found:	SPAC1B3.02c [Sanger Pombe]
Description(s) found: Found 21 descriptions. SHOW ALL	transcription elongation factor, Elf1 family [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	107 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA][ISS]
Biological Process:	regulation of RNA elongation [IC] chromatin organization [ISS] RNA elongation from RNA polymerase II promoter [ISS]
Molecular Function:	zinc ion binding [ISS] RNA polymerase II transcription elongation factor activity [ISS]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MGKRKAKAKV KPKRRAPPLD TTFTCLFCNH EKSVSCSLDK QSGVGNLHCK ICGQSHQCLI 60 61 TALSAPIDVY SDWIDACDAV ANQAKEVDNI NDQEAYSPEA AYEEEKE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..107]	PSI-BLAST	29.0	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription elongation regulator activity	4.34964147855173	bayes_pls_golite062009
transcription regulator activity	3.36253105801209	bayes_pls_golite062009
DNA-directed RNA polymerase activity	2.94226997600631	bayes_pls_golite062009
RNA polymerase activity	2.94226997600631	bayes_pls_golite062009
binding	2.58311326284197	bayes_pls_golite062009
nucleic acid binding	1.8086747972572	bayes_pls_golite062009
DNA binding	1.76634962183736	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.57988053581899	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.28009006260418	bayes_pls_golite062009
nucleotidyltransferase activity	0.944924567731798	bayes_pls_golite062009
protein binding	0.764662055834369	bayes_pls_golite062009
positive transcription elongation factor activity	0.54769726775722	bayes_pls_golite062009
catalytic activity	0.434839928397784	bayes_pls_golite062009
RNA polymerase II transcription elongation factor activity	0.33828634213987	bayes_pls_golite062009
DNA primase activity	0.275932599899815	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.240481799431949	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.50

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle