YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: vps53

General Information:
Name(s) found: vps53 / SPAC3A12.15 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
SHOW ALL
  • GARP complex subunit Vps53 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 756 amino acids

    Gene Ontology:
    Cellular Component: GARP complex [ISSLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: vesicle-mediated transport [ISSLink to PubMed article]
    retrograde transport, endosome to Golgi [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGNDNSLI IKNIGNNEFK FVETLHELLP EDITYDDLGS LRLSLSERLQ ESVKKLDANK  60
   61 KTYEDAKLSM GEKMDDLNSS IVSLLQELST LQSVAENTQS SIVQMTSEIK NLDFAKQNLA 120
  121 TSMTMLKRLQ MLVTAYEKLR TLRQNQKFGE AISLMQATLQ LLNFFKKYRS VERIASLSRS 180
  181 ISEFQKSFYE QVFDTFQSQF KKESGMRGGF SPSSVQYLNE LCRFIDIFAG DPPESVIRWY 240
  241 CRHQLEDFMK VFRENEEAGS LENLPRRYTW FKKLLQTYDQ LHKPIFPPHW KVDFRLYEVF 300
  301 CEETKNDLSK LLKDDRLSLQ VFVASLEQTL EFESFIDHRF YNTKSRFNSN FEPKERQAYN 360
  361 ALSSVFEPHY TLYFNQQSQE FSILFENFAL EKQTSTDESS QVLSSSIKLF QAYRKTLTQF 420
  421 VRLTRSSPLV GLKNLFIKWL RRYTQVELLD YQESSTFKDI AIRLNTAEYI YRTTIELEKR 480
  481 FQEISNKEFK DKMSFSEVLE VISSSRGTLL KFATGKFENV LNSDLEPLSK MDLKNIETVG 540
  541 DQSSYVGGAV QNMTAKASEF LSVVDLNMFA RNFCDRSCES FTRQFLNAIY LAKPISEVGA 600
  601 EQLLLDLYSF KNALLKLPDL KQDYSITDSY INHLTIFMGY IETVLKTLLT PASPKAGFIQ 660
  661 SYIFLVKDRS VTNFTVLLEL KGVGKSDISS FLQQFSDFVK KTPQLEESSP IFKYLTINTA 720
  721 VEQAATRSRL SLDLAPESSR TLQNLGRLFT SKKKHV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..284] PSI-BLAST 18.69897 Heavy meromyosin subfragment
    2 View Details [285..397] PSI-BLAST 5.69897 No description for 2dfsA was found.
    3 View Details [398..756] FFAS03 4.0 No description for 2fji1 was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle