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Protein Overview: SPAC12B10.04

General Information:
Name(s) found: SPAC12B10.04 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • tubulin-tyrosine ligase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 403 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: C-terminal protein-tyrosinylation [IC]
    microtubule cytoskeleton organization [IC]
    Molecular Function: tubulin-tyrosine ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKKDIKV YVNYRDEYAE PKIISALKNS GKELTFTNSA KEANFQWAQY EDIDFDEVYK  60
   61 NPKTKLCCSY VIRKALIRKE YLWRTVITYL AKHPDSILSK SVPEAYSLEL DYAEFLDDSL 120
  121 MEAYELRQEL EENATKNISE KQWYILKPSM CDRAQGIRLF STIEELQAIF DSFDDEESES 180
  181 EEAGLEEKGD ITVAFNNKIV ISQIRNFLVQ KYISKPLLLD HRKFHIRAYV LATGALSVYL 240
  241 FNEMLCLLAR DKYKKPTPDP DLLFSHLSNT CLQGDNVEQS SIRDFWNTSI ENKDDIFKSI 300
  301 LNIIGDVFEA AATTQGIHFQ PLENCFEIFG VDFLVDCESQ VYLLEVNSYP DFKQTGKNLS 360
  361 NIIENLFSAV VETAIIPFFE SSTKRNVDSK LTLAKKLQLF GFR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..403] FFAS03 1.56 Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  2.3452449284312 bayes_pls_golite062009
  • catalytic activity
    		•  2.29256365911737 bayes_pls_golite062009
  • binding
    		•  0.69937216690755 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.391643009882919 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.352085804409418 bayes_pls_golite062009
  • transferase activity
    		•  0.123556083864668 bayes_pls_golite062009
  • protein binding
    		•  0.1153438949594 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle