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Protein Overview: SPBC3D6.08c

General Information:
Name(s) found: SPBC3D6.08c [Sanger Pombe]
Description(s) found:
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  • gi|7491649|pir||T40368 hypothetical protein SPBC3D6.08c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3287944|sp|P87173.1|LSM1_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm1 [NCBI NR]
  • gi|2117304|emb|CAB09117.1| mRNA decapping complex subunit (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112312|ref|NP_595520.1| mRNA decapping complex subunit (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • mRNA decapping complex subunit [Sanger Pombe]
  • Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe (Fission yeast) [Swiss-Prot]
  • U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1 [Swiss-Prot]
  • SMALL NUCEAR RIBONUCLEOPROTEIN (SM PROTEIN); RNA- BINDING; POSSIBLY INVOLVED IN CONTROL OF MRNA DECAY; SIMILAR TO S. CEREVISIAE LSM1: P87173; [pompepVF.fasta]
  • PROTEIN OF THE SM CLASS OF RNA-BINDING PROTEINS, POSSIBLY INVOLVED IN CONTROL OF MRNA DECAY BY SIMILARITY TO YEAST LSM1: P87173; [pompepV13]
  • Hypothetical protein C3D6.08c in chromosome II [pompep4896]
  • |||small nucear ribonucleoprotein (Sm protein) [pompepnew.fasta]
  • |||small nuclear ribonucleoprotein (snRNP)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|3287944|sp|P87173|YB18_SCHPO Hypothetical protein C3D6.08c in chromosome IIgi|7491649|pir||T40368 hypothetical protein SPBC3D6.08c - fission yeast (Schizosaccharomyces pombe)gi|2117304|emb|CAB09117.1| [nrdb_11152004_Chlamydomonas]
  • |||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (P87173) Hypothetical protein C3D6.08c in chromosome II [pompep4896_normal_reversed]
  • |lsm1||mRNA decapping complex subunit |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • small nuclear ribonucleoprotein [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC3D6.08c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 140 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mRNA cap binding complex [ISSLink to PubMed article]
    cytoplasmic mRNA processing body [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: deadenylation-dependent decapping of nuclear-transcribed mRNA [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    RNA cap binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQATQIIPF TTSGSLVDYV DRKVIVVLRD GKKLIGILRS FDQFANLMLQ YTIERIYVDD  60
   61 MYGDIDRGVY IVRGENVVLL GELDLDKEYD AVKQLRRMPA EELYPLAKLH EEEKKKNIRE 120
  121 KGKYLHSVGF SVDGGHDDLY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] PSI-BLAST 17.69897 B core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
  • protein binding
    		•  0.187097443004706 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle