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Protein Overview: SPAC3F10.16c

General Information:
Name(s) found: SPAC3F10.16c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • GTP binding protein, HSR1-related [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 616 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ribosomal subunit export from nucleus [ISS]
    ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: GTP binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPKSKNQI GLGRAIQSDF TKNRRNRKGG LKHIVDSDPK AHRAALRSVT HETDLDEFLN  60
   61 TAELGEVEFI AEKQNVTVIQ NPEQNPFLLS KEEAARSKQK QEKNKDRLTI PRRPHWDQTT 120
  121 TAVELDRMER ESFLNWRRNL AQLQDVEGFI VTPFERNLEI WRQLWRVIER SDVVVQIVDA 180
  181 RNPLFFRSAH LEQYVKEVGP SKKNFLLVNK ADMLTEEQRN YWSSYFNENN IPFLFFSARM 240
  241 AAEANERGED LETYESTSSN EIPESLQADE NDVHSSRIAT LKVLEGIFEK FASTLPDGKT 300
  301 KMTFGLVGYP NVGKSSTINA LVGSKKVSVS STPGKTKHFQ TINLSEKVSL LDCPGLVFPS 360
  361 FATTQADLVL DGVLPIDQLR EYTGPSALMA ERIPKEVLET LYTIRIRIKP IEEGGTGVPS 420
  421 AQEVLFPFAR SRGFMRAHHG TPDDSRAARI LLKDYVNGKL LYVHPPPNYP NSGSEFNKEH 480
  481 HQKIVSATSD SITEKLQRTA ISDNTLSAES QLVDDEYFQE NPHVRPMVKG TAVAMQGPVY 540
  541 KGRNTMQPFQ RRLNDDASPK YPMNAQGKPL SRRKARQLTA LELGVSPEAL SSATSKKHNK 600
  601 KNKRSKQRSG VVIDDY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..71] PSI-BLAST 19.39794 Structure of the GTP-binding protein TrmE from Thermotoga maritima
    2 View Details [72..466] PSI-BLAST 46.0 No description for 2hjgA was found.
    3 View Details [467..616] PSI-BLAST 41.69897 GTPase Era, N-terminal domain; GTPase Era C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • structural constituent of ribosome
    		•  2.05455100361149 bayes_pls_golite062009
  • structural molecule activity
    		•  1.76183904409971 bayes_pls_golite062009
  • protein binding
    		•  0.922222418930273 bayes_pls_golite062009
  • binding
    		•  0.88584813990579 bayes_pls_golite062009
  • RNA binding
    		•  0.541311648591408 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.291353090213926 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle