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Protein Overview: smb1

General Information:
Name(s) found: smb1 / SPAC26A3.08 [Sanger Pombe]
Description(s) found:
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  • gi|7493413|pir||T38396 small nuclear ribonucleoprotein associated protein b - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19115063|ref|NP_594151.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1723236|sp|Q10163.1|RSMB_SCHPO RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=Sm protein B; Short=Sm-B; Short=SmB [NCBI NR]
  • gi|1177355|emb|CAA93231.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe] [NCBI NR]
  • Sm snRNP core protein Smb1 [Sanger Pombe]
  • Uncharacterized protein C26A3.08 - Schizosaccharomyces pombe (Fission yeast) [Swiss-Prot]
  • Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe GN=smb1 PE=2 SV=1 [Swiss-Prot]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B; PUTATIVE PRE-MRNA SPLICING FACTOR: Q10163; [pompepVF.fasta]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B; POSSIBLE PRE-MRNA SPLICING FACTOR: Q10163; [pompepV13]
  • Hypothetical protein C26A3.08 in chromosome I [pompep4896]
  • |smb1|smb|small nuclear ribonucleoprotein associated protein B [pompepnew.fasta]
  • |smb1|smb|small nuclear ribonucleoprotein (snRNP) (subunit B)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • small nuclear ribonucleoprotein associated protein b [Schizosaccharomyces pombe]gi|1177355|emb|CAA93231.1| SPAC26A3.08 [Schizosaccharomyces pombe]gi|1723236|sp|Q10163|YAU8_SCHPO Hypothetical protein C26A3.08 in chromosome Igi|7493413|pir||T38396 small [nrdb_11152004_Chlamydomonas]
  • |smb1|smb|small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q10163) Hypothetical protein C26A3.08 in chromosome I [pompep4896_normal_reversed]
  • |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC26A3.08 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC26A3.08 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Uncharacterized protein C26A3.08 [nr-271106-contam.fasta]
  • Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 147 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    spliceosomal complex [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    nuclear mRNA 5'-splice site recognition [IC]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTKMVSLL NHSLNVTTKD GRTFVGQLLA FDGFMNLVLS DCQEYRHIKK QNVPSNSVYE  60
   61 EKRMLGLVIL RGEFIVSLSV QGPPPMDPSM RGSLLSGPGV ARPAGRGIPL GQAPVGLAGP 120
  121 VRGVGYTAPP PPAGFGRGAP PPGFRPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 23.154902 B core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle