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Protein Overview: SPAC16C9.05

General Information:
Name(s) found: SPAC16C9.05 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • PHD finger containing protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Rpd3S complex [IDALink to PubMed articleLink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    histone deacetylation [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    small conjugating protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSINNSSQ PTVPSISNNS HGDSFVNEGP PSNFKNNSLT SSTHSSTDHV NVLPISQDKE  60
   61 MDISSPVKKQ KASYSNKSPN KAPIQKSRGS SLKSHLETES QQTPVKRRRR KATIRNVDYC 120
  121 SACGGRGLFI CCEGCPCSFH LSCLEPPLTP ENIPEGSWFC VTCSIKSHHP PKHPLSIWSQ 180
  181 LYDWIDSQNP SQYRLPDDLV HYFHGISRGD TGAYKETEGE MDTDEFSALP TGSSITNLAY 240
  241 CGYCSKPSMG ACWVYGCQLC DTFYHKNCKE HAKKCSHDSI GKKGMRVPKN AVVIRTPLVL 300
  301 DTTSNTLNPK VMISGWQFLM GEFPSDELLY FPRLPVSCLY KVSEDGLIKD FLYAIGIEAK 360
  361 KFNNERKKRE LEVIPPDVKS ALLPARTHPN LPIALRTLFN KART

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..175] PSI-BLAST 9.69897 No description for 2jm1A was found.
    3 View Details [176..404] PSI-BLAST 10.0 No description for 2f6jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle