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Protein Overview: urb2

General Information:
Name(s) found: urb2 / SPAC2G11.02 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ribosome biogenesis protein Urb2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1318 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQTLTKRI RDKNGSREDQ IDLANKLFRG EVDVYFPNKE EFIINFLLDR LKENSNLTCV  60
   61 NIGYWQLFLN IWKSDKLSGS FRVSAIRRQS LYPIILNAFE YLIKEFKKDV FLKISDVFVC 120
  121 VYSNLNILYI SRSFPDQISL LFSRYCYLIA SKIDDLLDSH PNEVFKETLI CVIQSAVHSQ 180
  181 ASSTKAQTQF LHQTLGSILA LLCKTQKGDP YFSFLNAVLM KCVLTQHTLD VLLLTKKDSS 240
  241 MTLCSLLNAI SFEPINLKAI PLFFIICADS INFHLSSVEK SISQQKASEL MYKLFSEHIA 300
  301 FLLSLKNLPE EATLDCMLSI CQVFENDNLH RGHSDEYTFA MLEQLLELSV KTLRQNTCWS 360
  361 TSWEMLSSLL AIDFDVLLPH SKILWECIKS VSHQDDIHAL KFLKRWVRAS AKARILDSFC 420
  421 IDWHLNVQTM SERSILTNRD FITSFSAVAE VSLSQISIKK LVTWLMSSES IMSENSNRFV 480
  481 VYYSLCKSLK RESYPAHLVP NFELFTRSIF NASLKNFNIL DERSQALLCM CQISHVQFFS 540
  541 SDMSISASVG MKTLFEDLMA EKSRGLSSTV WSLQLLLCYL EQCLRLNTLH EDTTFPMRVV 600
  601 NYALEYSSKA LDKFAENSHL ILLDMVDVGK PDLVLTLLCR WLHMVHLYSS RTSITSWIYS 660
  661 IASKFYFIDS LNLETKDSVL ESNWERFISS TETYELDSIR DSLIDCLIRL LCYSSNNAID 720
  721 PVSAPGNLDF DNSAELCSSL TRFTPKNIDF VLKSLIHIPI HSITKNQRTR LLNLLIIHEK 780
  781 LLSDKDNSAH ISLRKIIYTL MKTPCSSGFY RDPKIIIDLM QFGKTDLSFH KVHVLIMRSW 840
  841 IQHLDEGNKS EVILKLLQLI LADFRELPLE TITLIFNALV DSLPTSKHIK NSNDILSSVF 900
  901 TINDMLIDEM TAYLSKKESL CSGTFSCLLA CCNSVLRTQN LTSESLNKLH ILKVGIEEKA 960
  961 ISLKLNELPF LENWILFQCL LSFGGDDFLK VVAYMVYYRR TVGEMSFRVS DFELALSRLS1020
 1021 TNDADYAILN ILNLLTSNEC DEFDYSVLMK VVGVFANYSD CFQRNRHLVH MVLLCCTHVF1080
 1081 YNQTLKPATL IDSALDVFLC FVQKTSKFIS LDSFNTILTA LSTILNLKEL ECEPKDHANL1140
 1141 ILKIIQILNG LLFNHRSYMS GRFHVFYSIL KSLLYSMVQH DSEMKKIKGI ALMNFYKPKK1200
 1201 VPIHVVQSFC RLLTTWMNPN LMHDSNKKNS SLTDAERLFV KATTKHFVFL LTDFMSAQTV1260
 1261 YQIDIQVKEL LTNCFYNVYE NLSNHEKQMA LVAMNAPSKS LYQKFVNDYL IFAKWNEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] deduced N/A No confident structure predictions are available.
    2 View Details [208..332] deduced N/A No confident structure predictions are available.
    3 View Details [333..493] deduced N/A No confident structure predictions are available.
    4 View Details [494..715] deduced N/A No confident structure predictions are available.
    5 View Details [716..783] deduced N/A No confident structure predictions are available.
    6 View Details [784..883] deduced N/A Confident ab initio structure predictions are available.
    7 View Details [884..1062] deduced N/A No confident structure predictions are available.
    8 View Details [1063..1159] deduced N/A Confident ab initio structure predictions are available.
    9 View Details [1160..1318] MSA 1.009967 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle