YRC Public Data Repository - Protein Structure Prediction

Protein:	urb2
Organism:	Schizosaccharomyces pombe
Length:	1318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for urb2.

Description	E-value	Query Range	Subject Range
gi\|2130388 - gi\|2130388\|pir\|\|S62457 hypothetical protein SPAC2G11.02 - fission yeast (Schizosaccharomyces pombe)	2154.0	[0..1]	[1318..1]
gi\|44983477, gi\|... - gi\|45190535\|ref\|NP_984789.1\| AEL072Wp [Ashbya gossypii ATCC 10895], gi\|44983477\|gb\|AAS52613.1\| AEL07... gi\|44983477 - gi\|44983477\|gb\|AAS52613.1\| AEL072Wp [Ashbya gossypii ATCC 10895]	662.0	[0..729]	[1317..582]
gi\|40746279, gi\|... - gi\|67516755\|ref\|XP_658263.1\| hypothetical protein AN0659.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	317.0	[0..1066]	[1318..1221]
gi\|159131445 - gi\|159131445\|gb\|EDP56558.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66850325, gi\|... - gi\|70995870\|ref\|XP_752690.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668503...	314.0	[0..1068]	[1317..1233]
gi\|42820724 - gi\|42820724\|emb\|CAF32037.1\| conserved hypothetical protein [Aspergillus fumigatus]	314.0	[0..1068]	[1317..1211]
gi\|114197466, gi... - gi\|115491957\|ref\|XP_001210606.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	302.0	[0..1070]	[1317..1222]
gi\|83770592 - gi\|83770592\|dbj\|BAE60725.1\| unnamed protein product [Aspergillus oryzae] gi\|169763328 - gi\|169763328\|ref\|XP_001727564.1\| hypothetical protein [Aspergillus oryzae RIB40]	295.0	[0..1069]	[1317..516]
gi\|42554789, gi\|... - gi\|46124637\|ref\|XP_386872.1\| hypothetical protein FG06696.1 [Gibberella zeae PH-1], gi\|42554789\|gb\|E...	294.0	[0..1064]	[1317..1120]
gi\|28918222, gi\|... - gi\|32411741\|ref\|XP_326351.1\| predicted protein [Neurospora crassa], gi\|28918222\|gb\|EAA27900.1\| predi... gi\|85083522 - gi\|85083522\|ref\|XP_957136.1\| hypothetical protein NCU06496 [Neurospora crassa OR74A]	282.0	[0..1060]	[1317..1119]
gi\|39974981, gi\|... - gi\|39974981\|ref\|XP_368881.1\| hypothetical protein MGG_00363 [Magnaporthe grisea 70-15], gb\|EAA48705....	279.0	[0..1074]	[1318..1156]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQTLTKRI RDKNGSREDQ IDLANKLFRG EVDVYFPNKE EFIINFLLDR LKENSNLTCV  60
   61 NIGYWQLFLN IWKSDKLSGS FRVSAIRRQS LYPIILNAFE YLIKEFKKDV FLKISDVFVC 120
  121 VYSNLNILYI SRSFPDQISL LFSRYCYLIA SKIDDLLDSH PNEVFKETLI CVIQSAVHSQ 180
  181 ASSTKAQTQF LHQTLGSILA LLCKTQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDPYFSFLNA VLMKCVLTQH TLDVLLLTKK DSSMTLCSLL NAISFEPINL KAIPLFFIIC  60
   61 ADSINFHLSS VEKSISQQKA SELMYKLFSE HIAFLLSLKN LPEEATLDCM LSICQVFEND 120
  121 NLHRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [333-493]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSDEYTFAML EQLLELSVKT LRQNTCWSTS WEMLSSLLAI DFDVLLPHSK ILWECIKSVS  60
   61 HQDDIHALKF LKRWVRASAK ARILDSFCID WHLNVQTMSE RSILTNRDFI TSFSAVAEVS 120
  121 LSQISIKKLV TWLMSSESIM SENSNRFVVY YSLCKSLKRE S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [494-715]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPAHLVPNFE LFTRSIFNAS LKNFNILDER SQALLCMCQI SHVQFFSSDM SISASVGMKT  60
   61 LFEDLMAEKS RGLSSTVWSL QLLLCYLEQC LRLNTLHEDT TFPMRVVNYA LEYSSKALDK 120
  121 FAENSHLILL DMVDVGKPDL VLTLLCRWLH MVHLYSSRTS ITSWIYSIAS KFYFIDSLNL 180
  181 ETKDSVLESN WERFISSTET YELDSIRDSL IDCLIRLLCY SS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [716-783]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNAIDPVSAP GNLDFDNSAE LCSSLTRFTP KNIDFVLKSL IHIPIHSITK NQRTRLLNLL  60
   61 IIHEKLLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [784-883]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKDNSAHISL RKIIYTLMKT PCSSGFYRDP KIIIDLMQFG KTDLSFHKVH VLIMRSWIQH  60
   61 LDEGNKSEVI LKLLQLILAD FRELPLETIT LIFNALVDSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.974	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #7

Region A:
Residues: [884-1062]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSKHIKNSN DILSSVFTIN DMLIDEMTAY LSKKESLCSG TFSCLLACCN SVLRTQNLTS  60
   61 ESLNKLHILK VGIEEKAISL KLNELPFLEN WILFQCLLSF GGDDFLKVVA YMVYYRRTVG 120
  121 EMSFRVSDFE LALSRLSTND ADYAILNILN LLTSNECDEF DYSVLMKVVG VFANYSDCF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1063-1159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRNRHLVHMV LLCCTHVFYN QTLKPATLID SALDVFLCFV QKTSKFISLD SFNTILTALS  60
   61 TILNLKELEC EPKDHANLIL KIIQILNGLL FNHRSYM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.987	a.24.28	Description not found.

Predicted Domain #9

Region A:
Residues: [1160-1318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGRFHVFYSI LKSLLYSMVQ HDSEMKKIKG IALMNFYKPK KVPIHVVQSF CRLLTTWMNP  60
   61 NLMHDSNKKN SSLTDAERLF VKATTKHFVF LLTDFMSAQT VYQIDIQVKE LLTNCFYNVY 120
  121 ENLSNHEKQM ALVAMNAPSK SLYQKFVNDY LIFAKWNEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits