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Protein Overview: SPBC30B4.06c

General Information:
Name(s) found: SPBC30B4.06c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • tRNA uridine 5-carboxymethylaminomethyl modification enzyme [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 666 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    tRNA wobble uridine modification [IEA]
    tRNA modification [ISSLink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: FAD binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTTKRYFC TSFNRRKNVV VIGGGHAGVE AAAAASRLGA KTTLLTKSFD NIGQMSCNPA  60
   61 FGGIGKGTLM REIDALGGVV SGVCDESAIQ FHMLNRSNGP AVWSPRAQMD RSVFKKNMQK 120
  121 TISTYRKNLQ VREGAAVSIN VLTEDDGKQV CDSIVLEDGT AIPASCIVIT TGTFLGGQIN 180
  181 VGLTQLAAGR YGERPSLPLS KCLSNLGFKM GRLKTGTPPR LSSPINISKM TEQTGDEIPE 240
  241 TFSFLNLERD FSPALPQRSC YRTYTTELTH EIVRKNLAFA PHMLAGDILS PRYCPSLEAK 300
  301 VTRFPHKARH LIWLEPEGLD PNSWWYPNGL SNSMPEEIQH NIIRSIPGLE NCNIVRPAYG 360
  361 VMYDYVIPTQ LKATLETKKI QGLYLAGQIN GTTGYEEAAA QGILAGLNAG LSALGREPVD 420
  421 IPRNTALLGV MVDDLITKGV KEPYRVFTSR SEYRLTTRAD NADLRLTPLA QSIGLLDDQT 480
  481 HWESFQRTKS LLDFSNKIAK EFILSPQQWS KLGMPIPNDG KYRSAWDLLS FTNLDLFCVI 540
  541 SCIPKLKDIP KRVLQRLIIE GKYTYYIKRQ GTQNKQLNCR DESTVIPSDF DFDTLHSVSA 600
  601 EELMLLKTIR PATIGQLKRI QGIKPGTIIR LLRHTYYNPA KEAWLRKVYM PMYDMHSSEE 660
  661 NQSTNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..417] PSI-BLAST 27.221849 No description for 2i0zA was found.
    2 View Details [418..666] MSA 4.192968 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  4.24087829378489 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  2.84060092432585 bayes_pls_golite062009
  • catalytic activity
    		•  1.56773888754354 bayes_pls_golite062009
  • antioxidant activity
    		•  1.49429830917872 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.39990343076756 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.14701726867934 bayes_pls_golite062009
  • binding
    		•  0.400596507621048 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.36771673037999 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  0.187016999137115 bayes_pls_golite062009
  • protein binding
    		•  0.139858531143419 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle