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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC30B4.06c
Protein type: Globular with Signal Peptide
Type Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTTKRYFC TSFNRRKNVV VIGGGHAGVE AAAAASRLGA KTTLLTKSFD NIGQMSCNPA  60
   61 FGGIGKGTLM REIDALGGVV SGVCDESAIQ FHMLNRSNGP AVWSPRAQMD RSVFKKNMQK 120
  121 TISTYRKNLQ VREGAAVSIN VLTEDDGKQV CDSIVLEDGT AIPASCIVIT TGTFLGGQIN 180
  181 VGLTQLAAGR YGERPSLPLS KCLSNLGFKM GRLKTGTPPR LSSPINISKM TEQTGDEIPE 240
  241 TFSFLNLERD FSPALPQRSC YRTYTTELTH EIVRKNLAFA PHMLAGDILS PRYCPSLEAK 300
  301 VTRFPHKARH LIWLEPEGLD PNSWWYPNGL SNSMPEEIQH NIIRSIPGLE NCNIVRPAYG 360
  361 VMYDYVIPTQ LKATLETKKI QGLYLAGQIN GTTGYEEAAA QGILAGLNAG LSALGREPVD 420
  421 IPRNTALLGV MVDDLITKGV KEPYRVFTSR SEYRLTTRAD NADLRLTPLA QSIGLLDDQT 480
  481 HWESFQRTKS LLDFSNKIAK EFILSPQQWS KLGMPIPNDG KYRSAWDLLS FTNLDLFCVI 540
  541 SCIPKLKDIP KRVLQRLIIE GKYTYYIKRQ GTQNKQLNCR DESTVIPSDF DFDTLHSVSA 600
  601 EELMLLKTIR PATIGQLKRI QGIKPGTIIR LLRHTYYNPA KEAWLRKVYM PMYDMHSSEE 660
  661 NQSTNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle