YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: vps28

General Information:
Name(s) found: vps28 / SPAC1B3.07c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • gi|7493159|pir||T38025 probable vacuolar protein sorting-associated pro tein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2330741|emb|CAB11236.1| ESCRT I complex subunit Vps28 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115703|ref|NP_594791.1| ESCRT I complex subunit Vps28 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|13124596|sp|O13872.1|VPS28_SCHPO RecName: Full=Vacuolar protein sorting-associated protein 28 homolog; AltName: Full=ESCRT-I complex subunit vps28 [NCBI NR]
  • ESCRT I complex subunit Vps28 [Sanger Pombe]
  • Vacuolar protein sorting-associated protein 28 homolog OS=Schizosaccharomyces pombe GN=vps28 PE=2 SV=1 [Swiss-Prot]
  • (O13872) Vacuolar protein sorting-associated protein VPS28 homolog [Swiss-Prot]
  • PUTATIVE VACUOLAR SORTING PROTEIN: O13872; [pompepVF.fasta]
  • Vacuolar protein sorting-associated protein VPS28 homolog [pompep4896]
  • |vps28||putative vacuolar sorting protein [pompepnew.fasta]
  • |vps28||localization endosome (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative vacuolar protein sorting-associated pro tein [Schizosaccharomyces pombe]gi|2330741|emb|CAB11236.1| SPAC1B3.07c [Schizosaccharomyces pombe]gi|7493159|pir||T38025 probable vacuolar protein sorting-associated pro tein - fission yeast (Schizosaccha [nrdb_11152004_Chlamydomonas]
  • |vps28||localization endosome membrane|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • |vps28||ESCRT I complex subunit |Schizosaccharomyces pombe|chr 1|||Manual [pombe030305.revfasta]
  • |vps28||ESCRT I complex subunit Vps28|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Vacuolar protein sorting-associated protein 28 homolog [nr-271106-contam.fasta]
  • hypothetical protein SPAC1B3.07c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC1B3.07c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Vacuolar protein sorting-associated protein 28 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps28 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: ESCRT I complex [ISSLink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway [IMPLink to PubMed article]
    late endosome to vacuole transport [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEYYDLNLL EKETSEENNF HTKNQQVRED LSILYSILVA LEQLEKAFTK DAVSTSDFNS  60
   61 TCELLIQQWE SCFSDERVTQ AFGSFEDFCS KYRLQCPRAI KRIQEGISDE RSQSNSTFSN 120
  121 AISTTAEPSI AMNDTTPQTV NPTKAPSNPS ASIAKSIAGL VQNFITTLDA IRLNFIAKDQ 180
  181 LHPLLSELIV SMDDLTESLK IQVSCRNKLV QWLIKINNMN ITDQLNDVEK RELLYDLEQA 240
  241 YAECYSLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 31.69897 No description for 2cazB was found.
    2 View Details [151..248] PSI-BLAST 40.69897 No description for 2j9wA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.84486828479515 bayes_pls_golite062009
  • protein binding
    		•  1.057045320917 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle