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Protein Overview: SPAC16A10.03c

General Information:
Name(s) found: SPAC16A10.03c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • zinc finger protein Pep5/Vps11 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 860 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: vesicle docking [NASLink to PubMed article]
    intracellular protein transport [RCALink to PubMed article]
    protein ubiquitination [ISSLink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINEVDQTY RSLLTLKQWE KFSLFQWQEC PSIKILHDSV GNKISCIGKS TKRIAIGTLD  60
   61 GRIVILNSRL QLIRDFYACE QGIVQQIYIT ADQSALCCVV LDKQNFVYLQ FWSLNPSKKT 120
  121 NSNSPLCLYE HRLYGIPNPP FPATSLYVSI DIKTVVCGFA NGLVIRVEGD FVRDLGSRQD 180
  181 IILREKDSIT NLILYSPKKL FVSTTTQVMV YKIKNNTKKV ISNHGIPLFC SIQYQGKYIM 240
  241 CAGGSFLSVY TTPDMQLQNT YCVDGTFELL FSSFGLVFVV YTRKNGENGL ENNSSIREIK 300
  301 ALDVEKRYVL YESLLEQSYD NIFFNSFDCI FFSSTKVPCQ LIRLPSDFVL CKMKGKKEHK 360
  361 DAFKIANYLG SPEDTIRECA LAAAGECRQQ LNFQDATYYY IEAIPFSDSA EIIKFYLEKK 420
  421 LIKELTSYLE ALSAKGFAFS HEISTLIYLY IKLRKLDKLT EYVSGCPTEI SLPILRKYKC 480
  481 LDQMELLGTI RKLPNVCMEV YQEKGDVEKA FNHLQVCNLP ELLRTSNSFG IWLFNSDPMR 540
  541 FMKEAIRNIE ILNSQGKDKE LSNILKIVYL GIFSQNVQIQ LIFLDELLKS KKSENVLKFI 600
  601 YTRKLYALMQ KELQHSNPQN ELDALQIIHD SQGLLDYESS ILCLQAVSWK QVTDLLYSHL 660
  661 SLKEGQDDSL IQQIISDPET VKTLSETYSS EDALHVLKFF VRERSITNKY EDILYKILEA 720
  721 CFMQFRIPIQ HVLNILVKDG TLNFCFLKPL LLKWMNDYET RIHQNDDEIQ VIKNDIEKKR 780
  781 QLLGTIQDSE KVCDNCEGLL DVPFVSYSCL HLVHRDCATE TVCPKCKAGY LDKKNSHDQK 840
  841 KTSTFSELFH DFESIDSVML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..262] PSI-BLAST 3.69897 Actin interacting protein 1
    2 View Details [263..792] PSI-BLAST 60.09691 Clathrin D6 Coat
    3 View Details [793..860] FFAS03 1.08 No description for 2cklA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  3.10232773079579 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.89805111479917 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.01595241503145 bayes_pls_golite062009
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
  • protein binding
    		•  1.35583841097129 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.734230328744066 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.693814013902061 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.190100099674138 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle