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Protein Overview: srp54

General Information:
Name(s) found: srp54 / SPCC188.06c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • signal recognition particle subunit Srp54 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 522 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    signal recognition particle, endoplasmic reticulum targeting [IDALink to PubMed article]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane [IMPLink to PubMed article]
    Molecular Function: GTP binding [IEA]
    GTPase activity [IMPLink to PubMed article]
    7S RNA binding [IMPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFADLGRRL NSALGDFSKA TSVNEELVDT LLKNICTALL ETDVNVRLVQ ELRSNIKKKI  60
   61 NVSTLPQGIN GKRIVQKAVF DELCSLVDPK VDAFTPKKGR PSVIMMVGLQ GSGKTTTCSK 120
  121 LALHYQRRGL KSCLVAADTF RAGAFDQLKQ NAIKARVPYF GSYTETDPVV IAKEGVDKFK 180
  181 NDRFDVIIVD TSGRHQQEQE LFAEMVEISD AIRPDQTIMI LDASIGQAAE SQSKAFKETA 240
  241 DFGAVIITKL DGHAKGGGAL SAVAATKTPI VFIGTGEHIN DLERFSPRSF ISKLLGLGDL 300
  301 EGLMEHVQSL DFDKKNMVKN LEQGKFTVRD FRDQLGNIMK LGPLSKMASM IPGMSNMMNG 360
  361 MNDEEGSLRM KRMLYIVDSM TEQELDSDGL LFVEQPSRVL RVARGSGTSV LEVEETISQV 420
  421 RVFAQMAKKI GGKDGILGKL GGNPAAALKK DPRQLAAMQK RMQAMGMGGG MPGLNPGSMN 480
  481 FGDISKMANM LMGGGGPGGA GGMDFSGMLN QFQNMQKPPR RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..522] PSI-BLAST 106.0 No description for 2j37W was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle