YRC Public Data Repository - Protein Structure Prediction

Protein:	srp54
Organism:	Schizosaccharomyces pombe
Length:	522 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srp54.

Description	E-value	Query Range	Subject Range
gi\|226739 - gi\|226739\|prf\|\|1604366A signal recognition particle 54kD protein	403.0	[0..1]	[522..1]
gi\|41409081, gi\|... - gi\|41409081\|ref\|NP_961917.1\| hypothetical protein MAP2983c [Mycobacterium avium subsp. paratuberculo...	401.0	[0..2]	[515..1]
SRP54_MYCLE, SR5... - Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1, (O33013) Signal recogn... SRP54_MYCLE - Signal recognition particle protein OS=Mycobacterium leprae (strain TN) GN=ffh PE=3 SV=1 gi\|221230331, gi... - gi\|221230331\|ref\|YP_002503747.1\| signal recognition particle protein [Mycobacterium leprae Br4923], ...	390.0	[0..2]	[513..1]
SRP54_MYCBO - Signal recognition particle protein OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ffh ... SRP54_MYCTO - Signal recognition particle protein OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=ffh... SRP54_MYCTU - Signal recognition particle protein OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ffh... gi\|76783392, gi\|... - gi\|76783392\|ref\|ZP_00770584.1\| COG0541: Signal recognition particle GTPase [Mycobacterium tuberculos... gi\|215428357 - gi\|215428357\|ref\|ZP_03426276.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|254551987 - gi\|254551987\|ref\|ZP_05142434.1\| putative signal recognition particle protein [Mycobacterium tubercul... gi\|124602065, gi... - gi\|81253051\|ref\|ZP_00877618.1\| COG0541: Signal recognition particle GTPase [Mycobacterium tuberculos... gi\|215404890 - gi\|215404890\|ref\|ZP_03417071.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|148506912, gi... - gi\|167969545\|ref\|ZP_02551822.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... SR54_MYCTU, SRP5... - Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=1 SV=1, (P66844) Signal ... SRP54_MYCBO, SR5... - Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1, (P66845) Signal recogni... gi\|224991289, gi... - gi\|224991289\|ref\|YP_002645978.1\| putative signal recognition particle protein [Mycobacterium bovis B... gi\|121494445, gi... - gi\|121638797\|ref\|YP_979021.1\| putative signal recognition particle protein ffh [Mycobacterium bovis ... gi\|218754669 - gi\|218754669\|ref\|ZP_03533465.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|197738546, gi... - gi\|254365555\|ref\|ZP_04981600.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ...	390.0	[0..2]	[515..1]
gi\|38174419, gi\|... - gi\|45360609\|ref\|NP_988977.1\| signal recognition particle 54 [Xenopus (Silurana) tropicalis], gi\|3817...	389.0	[0..1]	[508..1]
gi\|20807909 - gi\|20807909\|ref\|NP_623080.1\| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB... gi\|20807909, gi\|... - gi\|20807909\|ref\|NP_623080.1\| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB...	389.0	[0..1]	[441..2]
gi\|147678059, gi... - gi\|98662836\|dbj\|GAA00247.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476780...	386.0	[0..1]	[445..1]
gi\|90203603, gi\|... - gi\|90203603\|ref\|ZP_01206248.1\| Signal recognition particle protein [Mycobacterium vanbaalenii PYR-1]...	385.0	[0..2]	[514..1]
SR543_ARATH - Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2	385.0	[0..1]	[494..1]
gi\|25011071, gi\|... - gi\|25011071\|ref\|NP_735466.1\| hypothetical protein gbs1017 [Streptococcus agalactiae NEM316], gi\|2309... gi\|76787075, gi\|... - gi\|76787075\|ref\|YP_329698.1\| signal recognition particle protein [Streptococcus agalactiae A909], gi... gi\|22537142, gi\|... - gi\|22537142\|ref\|NP_687993.1\| signal recognition particle protein Ffh [Streptococcus agalactiae 2603V... gi\|77413611, gi\|... - gi\|77413611\|ref\|ZP_00789797.1\| signal recognition particle protein [Streptococcus agalactiae 515], g... gi\|77412008, gi\|... - gi\|77412008\|ref\|ZP_00788337.1\| signal recognition particle protein [Streptococcus agalactiae CJB111]... gi\|77405715, gi\|... - gi\|77405715\|ref\|ZP_00782802.1\| signal recognition particle protein [Streptococcus agalactiae H36B], ... gi\|76797794, gi\|... - gi\|76797794\|ref\|ZP_00780060.1\| signal recognition particle protein [Streptococcus agalactiae 18RS21]...	384.0	[0..1]	[514..1]

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Predicted Domain #1

Region A:
Residues: [1-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFADLGRRL NSALGDFSKA TSVNEELVDT LLKNICTALL ETDVNVRLVQ ELRSNIKKKI  60
   61 NVSTLPQGIN GKRIVQKAVF DELCSLVDPK VDAFTPKKGR PSVIMMVGLQ GSGKTTTCSK 120
  121 LALHYQRRGL KSCLVAADTF RAGAFDQLKQ NAIKARVPYF GSYTETDPVV IAKEGVDKFK 180
  181 NDRFDVIIVD TSGRHQQEQE LFAEMVEISD AIRPDQTIMI LDASIGQAAE SQSKAFKETA 240
  241 DFGAVIITKL DGHAKGGGAL SAVAATKTPI VFIGTGEHIN DLERFSPRSF ISKLLGLGDL 300
  301 EGLMEHVQSL DFDKKNMVKN LEQGKFTVRD FRDQLGNIMK LGPLSKMASM IPGMSNMMNG 360
  361 MNDEEGSLRM KRMLYIVDSM TEQELDSDGL LFVEQPSRVL RVARGSGTSV LEVEETISQV 420
  421 RVFAQMAKKI GGKDGILGKL GGNPAAALKK DPRQLAAMQK RMQAMGMGGG MPGLNPGSMN 480
  481 FGDISKMANM LMGGGGPGGA GGMDFSGMLN QFQNMQKPPR RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2j37W
Description:	No description for 2j37W was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits