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Protein Overview: SPBC12C2.07c

General Information:
Name(s) found: SPBC12C2.07c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • spermidine synthase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: pantothenate biosynthetic process [ISSLink to PubMed article]
    spermidine biosynthetic process [ISSLink to PubMed article]
    Molecular Function: spermidine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQELSHPL IKDGWFREIN NMWPGQAMTL KVKKVLYAGK SKYQDVLVFE SETYGHVLVL  60
   61 DGAIQATERD EFSYQEMIAH LALNSHPNPK KVLVIGGGDG GVLREVVKHE CVEEAILCDI 120
  121 DEDVIKVSKQ YLPEMSAGFN HPKVKVHIGD GFKFLQDYQN TFDVIITDSS DPDGPAEALF 180
  181 QKPYFQLLSD ALRGGGVITT QAECMWIHLG VISNVLTAVK TVFPNVRYAY TTIPTYPSGS 240
  241 IGFVVASKDA SIDLSKPLRK WSPEEENKLC KYYNSEIHAA SFVLPTFARD VVDKATSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..298] PSI-BLAST 64.0 No description for 2o05A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • spermidine synthase activity
    		•  2.31131562815571 bayes_pls_golite062009
  • transferase activity
    		•  1.77671966857605 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.61435611638306 bayes_pls_golite062009
  • DNA binding
    		•  1.53375495589674 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.31440474302645 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • binding
    		•  0.976078016260105 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.837368219068434 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.69697643153076 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.644010137949015 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.635463629299812 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.57386401278889 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle