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Protein Overview: smd1

General Information:
Name(s) found: smd1 / SPAC27D7.07c [Sanger Pombe]
Description(s) found:
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  • pir||T38440 small nuclear ribonucleoprotein smd1 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2664241|emb|CAA15826.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115525|ref|NP_594613.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|12230564|sp|O42661.1|SMD1_SCHPO RecName: Full=Probable small nuclear ribonucleoprotein Sm D1; Short=Sm-D1; AltName: Full=snRNP core protein D1 [NCBI NR]
  • Sm snRNP core protein Smd1 [Sanger Pombe]
  • Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1 [Swiss-Prot]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE- MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMD1: O42661; [pompepVF.fasta]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE-MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMD1: O42661; [pompepV13]
  • Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) [pompep4896]
  • |smd1||small nuclear ribonucleoprotein [pompepnew.fasta]
  • |smd1||small nuclear ribonucleoprotein (snRNP)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • small nuclear ribonucleoprotein smd1 [Schizosaccharomyces pombe]gi|2664241|emb|CAA15826.1| small nuclear ribonucleoprotein; involved in mRNA splicing; core Sm protein; complexed with Cdc5p (PMID 11884590); similar to S. cerevisiae YGR074W [Schizosaccharo [nrdb_11152004_Chlamydomonas]
  • |smd1||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O42661) Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) [pompep4896_normal_reversed]
  • |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC27D7.07c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC27D7.07c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 117 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL TNETVSIELK NGTIVHGTIT SVDMQMNTHL KAVKMTVKGR EPVPVETLSI  60
   61 RGNNIRYYIL PDSLPLDTLL IDDSTKPKQK KKEVVRGRGR GRGRGTRGRG RGASRGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 24.522879 D1 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle