YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: smd1

General Information:
Name(s) found: smd1 / SPAC27D7.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • Sm snRNP core protein Smd1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 117 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL TNETVSIELK NGTIVHGTIT SVDMQMNTHL KAVKMTVKGR EPVPVETLSI  60
   61 RGNNIRYYIL PDSLPLDTLL IDDSTKPKQK KKEVVRGRGR GRGRGTRGRG RGASRGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 24.522879 D1 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle