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Protein Overview: scw1

General Information:
Name(s) found: scw1 / SPCC16C4.07 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • RNA-binding protein Scw1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 561 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed articleLink to PubMed article]
    Biological Process: regulation of barrier septum formation [IGILink to PubMed article]
    regulation of fungal-type cell wall biogenesis [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVGSPSAIE KPLSLSSKTK VGDETEFTED ALRGSSLVPT GILNGDDECH ALHMSPQAIH  60
   61 SQAGKAESDG LPTYASVEKS TTPIGRLLSN LNGGLASAPP KVGFGFPRYY ALRIEDLPRD 120
  121 LTPREFLCTF LFATNVVSVE LNPVSVDNEV AHGLAVFSSR DAAASARDTL LSSDVYSACS 180
  181 MIILDNYRKG SQTNLSDETE GSESSVSFNR LSRNHSPTRP LLGNRDLFRR SSNHVSASMP 240
  241 TANHSESAYR HSKTPLGDST FQAPNNGGSL HSDRLWSSFP VSYPLTLANV LAKDEVGSPT 300
  301 WSPTPSKSST NLRQDGVPPI LRFNSLSINT NVARNYLSSE KGYSAHTQNS SAQSPHPRVF 360
  361 SANSAFSTTS PPPLTPSTSR DYPFSASTIS PSTPFSAYSS SHGIHQRIPA STPTNTNPAD 420
  421 QNPPCNTIYV GNLPPSTSEE ELKVLFSTQV GYKRLCFRTK GNGPMCFVEF ENIPYAMEAL 480
  481 KNLQGVCLSS SIKGGIRLSF SKNPLGVRSS SSSHNNHNGN VRNLHSGSMN NYNTDSLLNH 540
  541 TGGHNEVHAS PSWGNNLMYG K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..199] PSI-BLAST 13.522879 No description for 2do0A was found.
    3 View Details [200..321] deduced N/A No confident structure predictions are available.
    4 View Details [322..561] PSI-BLAST 17.154902 Sex-lethal protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  3.00411894202318 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31150433509655 bayes_pls_golite062009
  • RNA binding
    		•  2.05010436328789 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA binding
    		•  0.505477067109476 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle