| Protein: | scw1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 561 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scw1.
| Description | E-value | Query Range |
Subject Range |
|
|
171.0 | [0..112] | [557..13] |
|
|
171.0 | [0..112] | [561..13] |
|
|
170.0 | [0..61] | [560..17] |
|
|
168.0 | [0..100] | [556..1] |
|
|
166.0 | [0..63] | [559..33] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MFVGSPSAIE KPLSLSSKTK VGDETEFTED ALRGSSLVPT GILNGDDECH ALHMSPQAIH 60
61 SQAGKAESDG LPTYASVEKS TTPIGRLLSN LN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [93-199] |
1 11 21 31 41 51
| | | | | |
1 GGLASAPPKV GFGFPRYYAL RIEDLPRDLT PREFLCTFLF ATNVVSVELN PVSVDNEVAH 60
61 GLAVFSSRDA AASARDTLLS SDVYSACSMI ILDNYRKGSQ TNLSDET
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 2do0A |
| Description: | No description for 2do0A was found. |
|
Region A: Residues: [200-321] |
1 11 21 31 41 51
| | | | | |
1 EGSESSVSFN RLSRNHSPTR PLLGNRDLFR RSSNHVSASM PTANHSESAY RHSKTPLGDS 60
61 TFQAPNNGGS LHSDRLWSSF PVSYPLTLAN VLAKDEVGSP TWSPTPSKSS TNLRQDGVPP 120
121 IL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [322-561] |
1 11 21 31 41 51
| | | | | |
1 RFNSLSINTN VARNYLSSEK GYSAHTQNSS AQSPHPRVFS ANSAFSTTSP PPLTPSTSRD 60
61 YPFSASTISP STPFSAYSSS HGIHQRIPAS TPTNTNPADQ NPPCNTIYVG NLPPSTSEEE 120
121 LKVLFSTQVG YKRLCFRTKG NGPMCFVEFE NIPYAMEALK NLQGVCLSSS IKGGIRLSFS 180
181 KNPLGVRSSS SSHNNHNGNV RNLHSGSMNN YNTDSLLNHT GGHNEVHASP SWGNNLMYGK 240
241
|
| Detection Method: | |
| Confidence: | 17.154902 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| nucleic acid binding | 2.31150433509655 | bayes_pls_golite062009 |
| RNA binding | 2.05010436328789 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA binding | 0.505477067109476 | bayes_pls_golite062009 |
