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Protein Overview: scr1

General Information:
Name(s) found: scr1 / SPBC1D7.02c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • transcription factor Scr1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 565 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of transcription [ICLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: transcription factor activity [NASLink to PubMed article]
    zinc ion binding [IEA]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEATTATTT GKPSRSTKNP DAPRPYKCPL CTKAFYRLEH QTRHIRTHTG EKPHVCTFPG  60
   61 CAKRFSRSDE LTRHARIHTN ANSRRNAAAA AAANNSARSS NSPAGNLEPS TNNAGVHMTN 120
  121 ASMNPNVNPS YPVFIPQVGM SVAPPVATAA VSMSYPHHYS ASVQQQQATF VSNGQPHNLP 180
  181 AQAQPATIYG IPDALHTTQN GTTIHVTGTP PGAVSQRSEP DSRLSSMNEM QLLASAAANQ 240
  241 LDAAPRITPT KSSGVNLMPL SNAPSPPKQM NVVGSLPSSS NTSPNHLASV PNRGLTSNSS 300
  301 TGSFTKYTNG SSNSLYSNSS MQTPYLPSKS NSSTSLHSMY GVGTTAYAPQ SLRYAHYNYL 360
  361 PYSRPSVSNG FDDDSSSSDF AHFRYQRRSR PVSPCSTAPS SPTFSTRSFS PTPDVTPLVT 420
  421 PAHSPRLRPM DDPSCVQLPS IRSLSLRPSQ VPLIPPLKCD PNAFSASTPA SGAVSRTPSS 480
  481 VSLSSLSNVN SSMPHKPASQ SNVGPVRISS NRRSRKFSSS SRVSVSNLLA GSPPSPSSST 540
  541 KSASSSYSTT TPAFSIGPLT PMTKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 26.154902 Transcription factor IIIA, TFIIIA
    2 View Details [165..365] PSI-BLAST 45.30103 No description for 2i13A was found.
    3 View Details [366..565] FFAS03 1.13 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.72893576328611 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.69485293197742 bayes_pls_golite062009
  • DNA binding
    		•  1.56529962350735 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34618935906821 bayes_pls_golite062009
  • transcription factor activity
    		•  0.482168429405299 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle