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Protein Overview: mrps5

General Information:
Name(s) found: mrps5 / SPAC4G9.17c [Sanger Pombe]
Description(s) found:
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  • pir||T38876 probable ribosomal protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19114611|ref|NP_593699.1| mitochondrial ribosomal protein subunit S5 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|1710791|sp|Q10234.1|RT05_SCHPO RecName: Full=Probable 40S ribosomal protein S5, mitochondrial [NCBI NR]
  • gi|1204217|emb|CAA93567.1| mitochondrial ribosomal protein subunit S5 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial ribosomal protein subunit S5 [Sanger Pombe]
  • Probable 40S ribosomal protein S5, mitochondrial OS=Schizosaccharomyces pombe GN=mrps5 PE=1 SV=1 [Swiss-Prot]
  • MITOCHONDRIAL RIBOSOMAL PROTEIN S5: Q10234; [pompepVF.fasta]
  • Probable mitochondrial 40S ribosomal protein S5 [pompep4896]
  • |||mitochondrial ribosomal protein S5 [pompepnew.fasta]
  • |||mitochondrial ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • probable ribosomal protein [Schizosaccharomyces pombe]gi|1204217|emb|CAA93567.1| SPAC4G9.17c [Schizosaccharomyces pombe]gi|7492905|pir||T38876 probable ribosomal protein - fission yeast (Schizosaccharomyces pombe)gi|1710791|sp|Q10234|RT05_SCHPO Probab [nrdb_11152004_Chlamydomonas]
  • |mrps5||mitochondrial ribosomal protein subunit s5|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q10234) Probable mitochondrial 40S ribosomal protein S5 [pompep4896_normal_reversed]
  • |mrps5||mitochondrial ribosomal protein subunit S5 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC4G9.17c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC4G9.17c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Probable 37S ribosomal protein S5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrp5 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSFSHFLQ IGSRRQPTYF RCFHKTTVHL NSFKNDPKKE LNSNLNEKSV EESSKNETKE  60
   61 QFNSSSIPRE SESEGKTASN TSPLSPKKVE NLSKLFNDIN EDVSIEELKS RFKDHLPFYE 120
  121 NYIRNHPLAI EALQKSTAPR QTGLKLNYVS KLDKYVTPLD GYSHLGSEES NGEIPDKWED 180
  181 FKDDLTFEIS SKFSPFDFGD AGKSTSDAEF LSDISGIPKS DLRALMFVPL VRRRVVNQTR 240
  241 KGKIASMYVL TVVGNRNGVA GFGEGKAESY SLAYKQSCGR AVKNMVYIPR YDKRTVYGVI 300
  301 HKKFHAVRLT LRSRPAGFGL RCNPILHEIC RCAGIKDISG EILGSKNGMN TVKAMFEALQ 360
  361 SQRLPEDIAM ERGQKFVDVQ REYYKQT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] deduced N/A No confident structure predictions are available.
    2 View Details [187..387] PSI-BLAST 56.0 No description for 1vs5E was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  6.7575603459566 bayes_pls_golite062009
  • structural molecule activity
    		•  6.24187874355454 bayes_pls_golite062009
  • RNA binding
    		•  3.5405508156591 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.06806242310926 bayes_pls_golite062009
  • binding
    		•  2.86619976447436 bayes_pls_golite062009
  • DNA binding
    		•  1.59400162385296 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  1.56111033008721 bayes_pls_golite062009
  • protein binding
    		•  1.43319050998069 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.36103792167395 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.35935222635763 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.31205157616894 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.10842504252923 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.967560318725736 bayes_pls_golite062009
  • mRNA binding
    		•  0.625703291171316 bayes_pls_golite062009
  • transcription factor activity
    		•  0.442070779997034 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.222896865667011 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle