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Protein Overview: rap1

General Information:
Name(s) found: rap1 / SPBC1778.02 [Sanger Pombe]
Description(s) found:
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  • gi|21542213|sp|Q96TL7.1|RAP1_SCHPO RecName: Full=DNA-binding protein rap1 [NCBI NR]
  • gi|19113077|ref|NP_596285.1| telomere binding protein Rap1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|16554302|gb|AAK57740.1| Rap1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|16549109|dbj|BAB70735.1| Rap1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|14253053|emb|CAC39280.1| telomere binding protein Rap1 [Schizosaccharomyces pombe] [NCBI NR]
  • telomere binding protein Rap1 [Sanger Pombe]
  • DNA-binding protein rap1 OS=Schizosaccharomyces pombe GN=rap1 PE=1 SV=1 [Swiss-Prot]
  • INVOLVED IN TELOMERIC FUNCTION; POSSIBLY INVOLVED IN AND MATING TYPE SILENCING; SIMILAR TO S. CEREVISIAE RAP1; GFP FUSION NUCLEAR; MYB FAMILY DNA- BINDING PROTEIN; TELOMERE BINDING IS ESSENTIAL FOR MEIOSIS; BRCT DOMAIN PROTEIN: Q96TL7; [pompepVF.fasta]
  • MAY BE INVOLVED IN TELOMERIC AND MATING TYPE SILENCING BY SIMILARITY TO S. CEREVISIAE RAP1; GFP-GENE FUSION NUCLEAR; MYB DNA BINDING DOMAIN: CAC39280; [pompepV13]
  • DNA-binding protein rap1 [pompep4896]
  • |rap1||involved in telomeric function [pompepnew.fasta]
  • |rap1||involved in telomere maintenance|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • may be involved in telomeric and mating type silencing by similarity to S. cerevisiae RAP1; GFP-gene fusion nuclear; myb DNA binding domain [Schizosaccharomyces pombe]gi|16554302|gb|AAK57740.1| Rap1 [Schizosaccharomyces pombe]gi|14253053|emb|CAC39280.1| [nrdb_11152004_Chlamydomonas]
  • |rap1||telomere binding protein Rap1|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q96TL7) DNA-binding protein rap1 [pompep4896_normal_reversed]
  • Rap1 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPBC1778.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC1778.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • DNA-binding protein rap1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rap1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 693 amino acids

    Gene Ontology:
    Cellular Component: chromosome, telomeric region [IDALink to PubMed article]
    nucleus [IDALink to PubMed articleLink to PubMed article]
    nuclear telomeric heterochromatin [ISSLink to PubMed article]
    telosome [ISSLink to PubMed article]
    Biological Process: meiotic telomere clustering [IMPLink to PubMed article]
    protection from non-homologous end joining at telomere [IGILink to PubMed article]
    telomeric 3' overhang formation [IGILink to PubMed article]
    telomere maintenance [IGILink to PubMed article]
    transcription from RNA polymerase II promoter [ISS]
    telomere capping [ICLink to PubMed article]
    chromatin silencing at telomere [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [ISS]
    protein binding [IPILink to PubMed articleLink to PubMed articleLink to PubMed article]
    specific RNA polymerase II transcription factor activity [IC]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTFTKSDG SSILFAVSKN FEHIRGFKNA IDCFKGKIEF LSFDKVDPTK HDYYLVAEDE  60
   61 RVSDLDIPKG FFERNPEFRH KMLKIAWITQ CIEQGKLLPT ESFEVELNQD DVNRTHDGFR 120
  121 KRELFTLEDE KILIDHVHKN DINRFGTKVY EELARKYPQH SLESWRQHYK YMKKRLPPVS 180
  181 DSDESNYCQR IIVKPYSSQK DYTQSTHEQT LSSPISKSAS VSKSENKALV NNKRYSDSYF 240
  241 YFSKMRRISI DVDYVDEDLN LINAYLSQFG KKRSLNELCA LLSRRFSNRH TFSEWRALFM 300
  301 HFFPFINSEG VDPAILSDRE TSAMLDETSD NEVADIDDQM IERKYLFSAS EPNTVKSTNR 360
  361 LIFSERKAYA ADDSIDNTPS KVPIVNSLSD PRTNRPFFYS NPDSMYRSIS NPLHLVDSQH 420
  421 LSPLNRKTHF NNPIGQPQFT CLDDHEKTLR ETSFRSLDDM SLRKSNSDNI FVKPGEDLEI 480
  481 PLLSDYSDSE NISEKSSDDE EAFEKQVTSS YSSPIKVKSQ GKSSKGSSGL DVREHEGSDD 540
  541 DAEVFVDRSP ESFGATKVAH TSLEGNAASH KKVEENMQQP VTKKQKKYRM VNEEAHTGPT 600
  601 IIIPSDNNEK VTTLPAGHVP SEEKGKFINL AMHELQNEVS ILRSSVNHRE VDEAIDNILR 660
  661 YTNSTEQQFL EAMESTGGRV RIAIAKLLSK QTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] FFAS03 1.22 c-Myb, DNA-binding domain
    2 View Details [177..316] deduced N/A No confident structure predictions are available.
    3 View Details [317..433] deduced N/A No confident structure predictions are available.
    4 View Details [434..496] deduced N/A No confident structure predictions are available.
    5 View Details [497..597] deduced N/A No confident structure predictions are available.
    6 View Details [598..693] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle