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Protein Overview: ptb1

General Information:
Name(s) found: ptb1 / SPAC167.02 [Sanger Pombe]
Description(s) found:
Found 22 descriptions.
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  • geranylgeranyltransferase II beta subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 311 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Rab-protein geranylgeranyltransferase complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISS]
    protein amino acid geranylgeranylation [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    Rab geranylgeranyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLLRDKHI SYLHDIGNRT DELDFWLKEH LHVSAIYWSC MSFWLLKKKD QIDKERIVSF  60
   61 LLSCLTESGG FACYPGHDDH ITNTVYAVQV LAMLDSLHVV DKDKVASYII GLQNEDGSMK 120
  121 GDRWGEIDAR FLYSGINCLA ILGKLDYLNK NTAVDWLMKC YNFDGGFGLC PGAESHGAMV 180
  181 FTCVAALKIL NKLDLIDEEL LGWWISERQV KGGGLNGRPE KLPDSCYGWW DLSPLAIIGK 240
  241 LDWIDRNQLI DFLLGTQDAD SGGFADRKED ATDVYHTCFS LAGLSLLQFP NIEPVDPRFC 300
  301 LPLEVTQKMK L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..311] PSI-BLAST 107.0 Rab geranylgeranyltransferase, beta subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein prenyltransferase activity
    		•  13.7736019666673 bayes_pls_golite062009
  • protein geranylgeranyltransferase activity
    		•  12.9757276506747 bayes_pls_golite062009
  • Rab geranylgeranyltransferase activity
    		•  12.8088011327065 bayes_pls_golite062009
  • prenyltransferase activity
    		•  11.6786310564018 bayes_pls_golite062009
  • protein farnesyltransferase activity
    		•  4.15546866363415 bayes_pls_golite062009
  • CAAX-protein geranylgeranyltransferase activity
    		•  3.9191671794027 bayes_pls_golite062009
  • transferase activity
    		•  1.0950430724883 bayes_pls_golite062009
  • binding
    		•  1.09280744446864 bayes_pls_golite062009
  • catalytic activity
    		•  0.497699107100544 bayes_pls_golite062009
  • protein binding
    		•  0.427029962299636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle