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Protein Overview: prp1

General Information:
Name(s) found: prp1 / SPBC6B1.07 [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • U4/U6 x U5 tri-snRNP complex subunit Prp1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 906 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: nuclear mRNA splicing, via spliceosome [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFYPDFLN MQPPPNYVAG LGRGATGFTT RSDLGPAQEL PSQESIKAAI EQRKSEIEEE  60
   61 EDIDPRYQDP DNEVALFATA PYDHEDEEAD KIYQSVEEHL SKRRKSQREK QEQLQKEKYE 120
  121 KENPKVSSQF ADLKRGLSTL TDEDWNNIPE PGDLTRKKRT KQPRRERFYA TSDFVLASAR 180
  181 NENQAISNFA VDTQAGTETP DMNGTKTNFV EIGAARDKVL GIKLAQASSN LTSPSTIDPK 240
  241 GYLTSLNSMV PKNANDLGDI RKARKLLQSV IETNPKHASG WVAAARLEEV ANKLSQAQSL 300
  301 ILKGCENCSR SEDVWLEAIR LHPAAEAKVI IANAVKKLPK SVTLWLEAEK LENQAQHKKR 360
  361 IIKKALEFNP TSVSLWKEAV NLEEEVDNAR ILLARAVELI PMSIDLWLAL ARLETYENAK 420
  421 KVLNKARQTI RTSHEVWIAA ARLEEQQGNV SRVEKIMARG VSELQATGGM LQRDQWLSEA 480
  481 EKCETEGAVI TAQAIINTCL GVGLDEEDQF DTWLDDAQSF IARKCIDCAR AVFAFSLRVY 540
  541 PKSEKLWLRA VELEKLYGTT ESVCSILEKA VESCPKAEIL WLLYAKERKN VNDIAGARNI 600
  601 LGRAFEYNSN SEEIWLAAVR IEFVNNENER ARKLLARARI ESGTERIWTK SISLERILDE 660
  661 KDRALQLLEN ALKIYPHYDK LYMMKGQIFE DKEQIELARD AYLAGTKVCP YSIPLWLLLA 720
  721 KLEEKQSVIR ARVVFDRAKV KNPKNEFLWL ELIKMELRAG NISQVRAALA KALQECPSSG 780
  781 LLWTEAIWLE PRAQRKTRAT DALRKCEGNA HLLCTIARML WLEKKADKAR SWFLKAVKAD 840
  841 QDNGDVWCWF YKYSLEAGNE DQQKEVLTSF ETADPHHGYF WPSITKDIKN SRKTPQELLH 900
  901 LAINVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] Pfam 91.920819 No description for PF06424.3 was found. No confident structure predictions are available.
    2 View Details [165..227] deduced N/A No confident structure predictions are available.
    3 View Details [228..726] PSI-BLAST 26.69897 No description for 2gw1A was found.
    4 View Details [727..906] PSI-BLAST 51.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle