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Protein Overview: SPBC83.09c

General Information:
Name(s) found: SPBC83.09c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • GYF domain [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nuclear chromatin [ISSLink to PubMed article]
    U5 snRNP [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTLRNPGN SSTVGDVHDV FFEYDVSNVG RKRPRTKEEG YYESESEEDE DQILNKEKKE  60
   61 GQSEDMFSDT SEDEKRTLPN DEAQKRRDFI ENGDAERLAH KGLRNKEVLN DDSDDEDDNG 120
  121 KYSKLRYEDI EGQEDTNQAN DLDADEEGSE ISVPSSPKRM SFNLKEDMEE GDFDENGNFI 180
  181 RKNYDPESQY DAWLNGSVSN KKSIAAAREA EQKRKEMENR RRNQELEEFS KLPFSTVPEA 240
  241 LSFFIARMER DESILEFLQR QSGNKKSYKK KKNNTAEGIS PERKSADAFR KKLIELITAG 300
  301 LTFLEDKIGK EDIYSETRES LQRIYQKLTS NSWSSPVSYD DSNSSQYNFK WEFDDKTYGP 360
  361 YTASQIQAWS NEGYFTDAKH AAFIQLANMD EWMYPNNICF CDVVSLKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] MSA 3.106997 View MSA. No confident structure predictions are available.
    2 View Details [251..336] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [337..408] PSI-BLAST 18.09691 The crystal structure of a binary U5 snRNP complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.676147090295427 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle