YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.09c
Organism:	Schizosaccharomyces pombe
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.09c.

Description	E-value	Query Range	Subject Range
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	194.0	[0..3]	[358..3993]
CG13185-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13185 (CG13185, FBgn0033661). It is a prote...	180.0	[0..3]	[346..4551]
gi\|109128205, gi... - gi\|109128205\|ref\|XP_001110433.1\| PREDICTED: CD2 antigen (cytoplasmic tail) binding protein 2 isoform...	178.0	[0..76]	[400..14]
gi\|109459373, gi... - gi\|109462891\|ref\|XP_001078400.1\| PREDICTED: similar to CD2 antigen (cytoplasmic tail) binding protei...	176.0	[0..76]	[400..14]
gi\|50510829 - gi\|50510829\|dbj\|BAD32400.1\| mKIAA1178 protein [Mus musculus]	169.0	[0..76]	[400..18]
gi\|76653319, gi\|... - gi\|76653321\|ref\|XP_591614.2\| PREDICTED: similar to CD2 antigen cytoplasmic tail-binding protein 2 (C...	168.0	[0..75]	[400..12]
gi\|197098480 - gi\|197098480\|ref\|NP_001125729.1\| CD2 (cytoplasmic tail) binding protein 2 [Pongo abelii] gi\|55728994 - gi\|55728994\|emb\|CAH91235.1\| hypothetical protein [Pongo abelii]	162.0	[0..76]	[400..14]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTLRNPGN SSTVGDVHDV FFEYDVSNVG RKRPRTKEEG YYESESEEDE DQILNKEKKE  60
   61 GQSEDMFSDT SEDEKRTLPN DEAQKRRDFI ENGDAERLAH KGLRNKEVLN DDSDDEDDNG 120
  121 KYSKLRYEDI EGQEDTNQAN DLDADEEGSE ISVPSSPKRM SFNLKEDMEE GDFDENGNFI 180
  181 RKNYDPESQY DAWLNGSVSN KKSIAAAREA EQKRKEMENR RRNQELEEFS KLPFSTVPEA 240
  241 LSFFIARMER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [251-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DESILEFLQR QSGNKKSYKK KKNNTAEGIS PERKSADAFR KKLIELITAG LTFLEDKIGK  60
   61 EDIYSETRES LQRIYQKLTS NSWSSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.811	0.021	chromatin	a.7.1	Spectrin repeat

Predicted Domain #3

Region A:
Residues: [337-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSYDDSNSSQ YNFKWEFDDK TYGPYTASQI QAWSNEGYFT DAKHAAFIQL ANMDEWMYPN  60
   61 NICFCDVVSL KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1syxB
Description:	The crystal structure of a binary U5 snRNP complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.676147090295427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: