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Protein Overview: ups1

General Information:
Name(s) found: ups1 / SPAC31G5.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • uroporphyrinogen-III synthase Ups1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: heme biosynthetic process [ISSLink to PubMed article]
    Molecular Function: uroporphyrinogen-III synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTALLLKTK SQPFDPYVEA FEKYGRDTAF IPVLRHKRVH EEQLRDKLKN VRKTYCGLIV  60
   61 TSQRVSETLD EALKQEDETE RQKILMETPI FTVGPATDDS IRRLGFQQTH GKDCGRGEVL 120
  121 ADLIEEWYTT TKQHKPLLFL VGEKHRDIIQ RKLGDDRVDS LIVYATQELE NTETQIKDTI 180
  181 RKHPTIDWIV AFSPTSICSL LNTFELKIAT IGPTTGDYLK KLGTQPNVVS PAPNPESLAS 240
  241 SIVAFDEENS S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..251] PSI-BLAST 44.154902 Uroporphyrinogen III synthase (U3S, HemD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrinogen-III synthase activity
    		•  3.75954315324218 bayes_pls_golite062009
  • binding
    		•  1.39689732651231 bayes_pls_golite062009
  • catalytic activity
    		•  1.13824203225664 bayes_pls_golite062009
  • hydro-lyase activity
    		•  0.290711782955013 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle