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Protein Overview: cdc1

General Information:
Name(s) found: cdc1 / SPAC27E2.05 [Sanger Pombe]
Description(s) found:
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  • pir||T38453 dna polymerase delta small subunit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2388945|emb|CAB11679.1| DNA polymerase delta small subunit Cdc1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2052246|emb|CAA73149.1| Cdc1 protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2052244|emb|CAA73148.1| Cdc1 protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115318|ref|NP_594406.1| DNA polymerase delta small subunit Cdc1 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|13431469|sp|P87324.1|DPOD2_SCHPO RecName: Full=DNA polymerase subunit delta-2 [NCBI NR]
  • DNA polymerase delta small subunit Cdc1 [Sanger Pombe]
  • DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe GN=cdc1 PE=1 SV=1 [Swiss-Prot]
  • (P87324) DNA polymerase delta subunit 2 (EC 2.7.7.7) [Swiss-Prot]
  • DNA POLYMERASE DELTA SMALL SUBUNIT: P87324; [pompepVF.fasta]
  • DNA polymerase delta subunit 2 (EC 2.7.7.7) [pompep4896]
  • |cdc1|mis1|DNA polymerase delta [pompepnew.fasta]
  • |cdc1|mis1|DNA polymerase delta (small subunit)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • dna polymerase delta small subunit [Schizosaccharomyces pombe]gi|2052246|emb|CAA73149.1| Cdc1 protein [Schizosaccharomyces pombe]gi|2052244|emb|CAA73148.1| Cdc1 protein [Schizosaccharomyces pombe]gi|2388945|emb|CAB11679.1| cdc1 [Schizosaccharomyces pom [nrdb_11152004_Chlamydomonas]
  • |cdc1|mis1|DNA polymerase delta |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • |cdc1|mis1|DNA polymerase delta small subunit Cdc1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Cdc1 protein [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC27E2.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • DNA polymerase subunit delta 2 [nr-271106-contam.fasta]
  • SPAC27E2.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 462 amino acids

    Gene Ontology:
    Cellular Component: delta DNA polymerase complex [TASLink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear replication fork [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: DNA strand elongation involved in DNA replication [TASLink to PubMed article]
    telomere maintenance [IMPLink to PubMed article]
    DNA synthesis involved in DNA repair [TASLink to PubMed article]
    DNA replication, removal of RNA primer [TASLink to PubMed article]
    Molecular Function: 3'-5' exonuclease activity [ICLink to PubMed article]
    DNA binding [IEA]
    DNA-directed DNA polymerase activity [TASLink to PubMed article]
    protein binding [IPILink to PubMed articleLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEVRHSIPC EETKRLELSL SQQTYSQQYA SIYFARLTAL RPRITEAASK KWPDKQRLER  60
   61 VLDVKSDEDC WVVATAYMTT ALKPNVMNDV TQLHTIVTTT EESPYVSPED AASGDIEYAL 120
  121 EDDYGRIDCS GSFLYDAGVV TGVVLAVLGH EDEQGRFVVV DVCFPGIFSH SIPMTTDESQ 180
  181 AQPEYIAAVS GLGLSNDGIE GIQVHQLVDF LRGTLPHVSS FSPSSIKRLI ILGNCLAPSI 240
  241 EIADSASASV PIGKKKVKRY GYDTSAYNPN PTFQLDNFLD QVCSSIDVTL MPGPYDYSST 300
  301 ILPQQPLHPA LLTKSKVWLG SSLQTVTNPT WLSLGNHFVL ATSGQNINDL RKYHPKKSSL 360
  361 QCMENTLLWN HITPTSPDTL WCYPFTDKDT FVMEEMPDLY LCGNQPKFGC KTVINEGNRI 420
  421 QLVSVPEFRK TGVLVLINMH TLNVEIIQFR PMSVKAETPI TS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..177] MSA 3.130997 View MSA. No confident structure predictions are available.
    2 View Details [178..462] FFAS03 1.31 No description for 2yvtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.89784024382425 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.54644459918406 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.75775204356118 bayes_pls_golite062009
  • transferase activity
    		•  1.71554219929081 bayes_pls_golite062009
  • binding
    		•  1.30309680165893 bayes_pls_golite062009
  • catalytic activity
    		•  1.30037658165549 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  1.17916462117542 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.950264524479969 bayes_pls_golite062009
  • phosphatase activity
    		•  0.829761417192212 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  0.768201004870964 bayes_pls_golite062009
  • structural molecule activity
    		•  0.211411396269789 bayes_pls_golite062009
  • protein binding
    		•  0.20380491058914 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle