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View Structure Prediction Details

Protein: cdc1
Organism: Schizosaccharomyces pombe
Length: 462 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc1.

Description E-value Query
Range
Subject
Range
gi|182891524, gi... - gi|28279582|gb|AAH45410.1| Pold2 protein [Danio rerio], gi|182891524|gb|AAI64684.1| Pold2 protein [D...
456.0 [0..15] [458..34]
gi|74010360 - gi|74010360|ref|XP_539802.2| PREDICTED: similar to DNA polymerase delta subunit 2 (DNA polymerase de...
442.0 [0..13] [458..34]
DPOD2_MOUSE - DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=1 SV=2
441.0 [0..13] [458..34]
DPOD2_RAT - DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1
440.0 [0..13] [458..34]
DPOD2_BOVIN - DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2
438.0 [0..13] [458..34]
DPOD2_ORYSJ - DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1
DPOD2_ORYSA, DPD... - DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice), (Q9LRE5) DNA polymerase delta...
437.0 [0..13] [456..10]
POLD2 - polymerase (DNA directed), delta 2, regulatory subunit 50kDa
gi|123982305, gi... - gi|208965368|dbj|BAG72698.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa [synthetic...
431.0 [0..13] [455..34]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEVRHSIPC EETKRLELSL SQQTYSQQYA SIYFARLTAL RPRITEAASK KWPDKQRLER  60
   61 VLDVKSDEDC WVVATAYMTT ALKPNVMNDV TQLHTIVTTT EESPYVSPED AASGDIEYAL 120
  121 EDDYGRIDCS GSFLYDAGVV TGVVLAVLGH EDEQGRFVVV DVCFPGIFSH SIPMTTD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESQAQPEYIA AVSGLGLSND GIEGIQVHQL VDFLRGTLPH VSSFSPSSIK RLIILGNCLA  60
   61 PSIEIADSAS ASVPIGKKKV KRYGYDTSAY NPNPTFQLDN FLDQVCSSID VTLMPGPYDY 120
  121 SSTILPQQPL HPALLTKSKV WLGSSLQTVT NPTWLSLGNH FVLATSGQNI NDLRKYHPKK 180
  181 SSLQCMENTL LWNHITPTSP DTLWCYPFTD KDTFVMEEMP DLYLCGNQPK FGCKTVINEG 240
  241 NRIQLVSVPE FRKTGVLVLI NMHTLNVEII QFRPMSVKAE TPITS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.31
Match: 2yvtA
Description: No description for 2yvtA was found.

Predicted functions:

Term Confidence Notes
hydrolase activity 2.89784024382425 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.54644459918406 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.75775204356118 bayes_pls_golite062009
transferase activity 1.71554219929081 bayes_pls_golite062009
binding 1.30309680165893 bayes_pls_golite062009
catalytic activity 1.30037658165549 bayes_pls_golite062009
protein serine/threonine phosphatase activity 1.17916462117542 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.950264524479969 bayes_pls_golite062009
phosphatase activity 0.829761417192212 bayes_pls_golite062009
phosphoprotein phosphatase activity 0.768201004870964 bayes_pls_golite062009
structural molecule activity 0.211411396269789 bayes_pls_golite062009
protein binding 0.20380491058914 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle