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Protein Overview: dbr1

General Information:
Name(s) found: dbr1 / SPAC17A5.02c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • RNA lariat debranching enzyme Dbr1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYFARLKPP PAFLKMRVGV QGCCHGILDN LYILAEKRKV DLLIIGGDFQ ALRNVSDYHG  60
   61 ISMPPKFKRL GDFFNYYNGR NKAPILTIFV GGNHEASNYL DELPYGGWVA PNIYYMGRSS 120
  121 VINVGGLRIA GISGIYSAMD YKKGRYEGLP YNYKMLKSIY HTREFDVLSL KSLQKPIDIF 180
  181 LSHDWPRGIE QHGDVAKLLR HKPFFRNEVE RNDLGSPALE ELLVELKPRY WMAAHLHTKF 240
  241 TAVVHHNSQE DDGKLSCSSK DVTSSGFSMK GLNEPSQERL PVEKEQNDKS DEEGSNNEQE 300
  301 EKQDKKQSTN RDLCRKESCK KEPSLSSSDQ VTKFLALDKC LPRRSYFEVV EIEPVEIPDS 360
  361 GAPYMQYDSE WLSVLRAMHP FQSHTIEQDP PLPSLEVVKT LKRKEEIWVD ENLVKKDKLG 420
  421 IPRNFCQTAP PHSRDITENM QRKFSSMSMF LIPFSFFIYK PSDGCL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] FFAS03 3.55 No description for 2yvtA was found.
    2 View Details [319..466] Pfam 100.026872 No description for PF05011.4 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.30037658165549 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.03603874199452 bayes_pls_golite062009
  • binding
    		•  0.908738313033381 bayes_pls_golite062009
  • hydrolase activity
    		•  0.880072091351833 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  0.768201004870964 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  0.634242884531037 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.463083693607652 bayes_pls_golite062009
  • phosphatase activity
    		•  0.325160962990544 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle