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Protein Overview: cox13

General Information:
Name(s) found: cox13 / SPCC1739.09c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • cytochrome c oxidase subunit VIa [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 130 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial respiratory chain complex IV [ISSLink to PubMed article]
    Biological Process: transmembrane transport [ICLink to PubMed article]
    regulation of catalytic activity [ICLink to PubMed article]
    aerobic respiration [ISSLink to PubMed article]
    Molecular Function: cytochrome-c oxidase activity [ISSLink to PubMed article]
    enzyme regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMMNRNIGF LSRTLKTSVP KRAGLLSFRA YSNEAKVNWL EEVQAEEEHA KRSSEFWKKV  60
   61 TYYIGGPALI LASANAYYIY CKHQEHAKHV EDTDPGYSFE NLRFKKYPWG DGSKTLFWND 120
  121 KVNHLKKDDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] PSI-BLAST 26.39794 Mitochondrial cytochrome c oxidase subunit VIa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytochrome-c oxidase activity
    		•  8.55593054200713 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors
    		•  8.55593054200713 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors, oxygen as acceptor
    		•  8.55593054200713 bayes_pls_golite062009
  • heme-copper terminal oxidase activity
    		•  8.33310447684473 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.93709142475202 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  3.42266067775966 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  3.27737232830687 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  2.64965096433631 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.41719119401631 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.22093703573522 bayes_pls_golite062009
  • catalytic activity
    		•  0.448769452796145 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle