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Protein Overview: sec21

General Information:
Name(s) found: sec21 / SPAC57A7.10c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • coatomer gamma subunit Sec21 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 905 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    COPI vesicle coat [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    retrograde vesicle-mediated transport, Golgi to ER [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSKKDDDG DESIFANVNQ VTVTQDARAF NSSSISPRKS RRLLSKIAYL IYTGEHFQEK  60
   61 QATELFFGIT KLFQHKDPSL RQFVYIIIKE LSVVAEDVIM ITSSIMKDTA TGRETIYRPN 120
  121 AIRSLIRVID ANTVPAIERI LTTGIVDPIS AVASAALVSA YHLYPVAKDI VSRWNNEVQD 180
  181 AVTSHNVGRK VASSPFFTST LGYTPNASGI SQYHALGLLY RIRRHDSIAM NKLLQLLVSN 240
  241 LGTVSNSHAF VMLIRYISSL MDQNTQFRDQ MVPFLHGWLK SKGDMVNLEV ARNMVRLKNI 300
  301 SDDDLQPVVS VLKIFLSSHR SATRFSAIRT LNELAMTRPH LVHSCNLNIE SLITDVNRSI 360
  361 ATYAITTLLK TGNDESVDRL MKQIVTFMSD ISDNFKIIVV DAIRSLCLKF PRKQDSMLTF 420
  421 LSNILCDEGG YEFKRAAVDA ISDMIKYIPE SKERALAELC EFIEDCEYPK IAVRILSILG 480
  481 EEGPKASEPT RFIRYIYNRI MLENAIVRSA AVSALTKFGL NAEDKFVQRS VKVILTRCLE 540
  541 DADDEVRDRA AFSVKALEDR DAFLPVVKSD KIPSLPALER SLVIYISERK FGQGFDIKSV 600
  601 PVLSQEEIDA ENLRIKKATT EVEFTEVTPA EDQNALASSN IETEFLNALE SVSEFNEYGP 660
  661 VLKSSPSPIE LTEQETEFVV KVVKHVFKDH LVVQFQLHNT LSEVILENAV VVSTPSTDDL 720
  721 VEECVVPAAI VSGEPVSIFV SFKFNDSVPY PLTTLTNTLQ FTTKEIDIHT GEPEEEGYED 780
  781 EYKIDDLDVS AGDFISPAYE SNFDGLFDSL EHEASEVYVL SLLDSFRSTC SRVAELLQMQ 840
  841 PLEGTENPTD KPVHVMKLSG KLVNGEKVLA LVKMAHSKDG EGITIKVIAR GESDSSVELV 900
  901 VGGIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..623] PSI-BLAST 89.0 AP1 clathrin adaptor core
    2 View Details [624..905] PSI-BLAST 88.154902 Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle