YRC Public Data Repository - Protein Structure Prediction

Protein:	sec21
Organism:	Schizosaccharomyces pombe
Length:	905 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec21.

Description	E-value	Query Range	Subject Range
COPG2_MOUSE - Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=1 SV=1	636.0	[0..2]	[904..4]
gi\|157817775, gi... - gi\|157817775\|ref\|NP_001100399.1\| hypothetical protein LOC301742 [Rattus norvegicus], gi\|149065190\|gb...	633.0	[0..2]	[904..4]
COPG2 - coatomer protein complex, subunit gamma 2	632.0	[0..2]	[904..4]
gi\|1066165 - gi\|1066165\|emb\|CAA63574.1\| coat protein gamma-cop [Bos primigenius] COPG1_BOVIN - Coatomer subunit gamma-1 OS=Bos taurus GN=COPG1 PE=1 SV=1	630.0	[0..2]	[904..4]
gi\|66910281, gi\|... - gi\|66910281\|gb\|AAH96860.1\| Copg2 protein [Danio rerio], gi\|182892180\|gb\|AAI65205.1\| Copg2 protein [D...	627.0	[0..2]	[904..4]

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Predicted Domain #1

Region A:
Residues: [1-623]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSKKDDDG DESIFANVNQ VTVTQDARAF NSSSISPRKS RRLLSKIAYL IYTGEHFQEK  60
   61 QATELFFGIT KLFQHKDPSL RQFVYIIIKE LSVVAEDVIM ITSSIMKDTA TGRETIYRPN 120
  121 AIRSLIRVID ANTVPAIERI LTTGIVDPIS AVASAALVSA YHLYPVAKDI VSRWNNEVQD 180
  181 AVTSHNVGRK VASSPFFTST LGYTPNASGI SQYHALGLLY RIRRHDSIAM NKLLQLLVSN 240
  241 LGTVSNSHAF VMLIRYISSL MDQNTQFRDQ MVPFLHGWLK SKGDMVNLEV ARNMVRLKNI 300
  301 SDDDLQPVVS VLKIFLSSHR SATRFSAIRT LNELAMTRPH LVHSCNLNIE SLITDVNRSI 360
  361 ATYAITTLLK TGNDESVDRL MKQIVTFMSD ISDNFKIIVV DAIRSLCLKF PRKQDSMLTF 420
  421 LSNILCDEGG YEFKRAAVDA ISDMIKYIPE SKERALAELC EFIEDCEYPK IAVRILSILG 480
  481 EEGPKASEPT RFIRYIYNRI MLENAIVRSA AVSALTKFGL NAEDKFVQRS VKVILTRCLE 540
  541 DADDEVRDRA AFSVKALEDR DAFLPVVKSD KIPSLPALER SLVIYISERK FGQGFDIKSV 600
  601 PVLSQEEIDA ENLRIKKATT EVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.0
Match:	1w63B
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [624-905]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTEVTPAEDQ NALASSNIET EFLNALESVS EFNEYGPVLK SSPSPIELTE QETEFVVKVV  60
   61 KHVFKDHLVV QFQLHNTLSE VILENAVVVS TPSTDDLVEE CVVPAAIVSG EPVSIFVSFK 120
  121 FNDSVPYPLT TLTNTLQFTT KEIDIHTGEP EEEGYEDEYK IDDLDVSAGD FISPAYESNF 180
  181 DGLFDSLEHE ASEVYVLSLL DSFRSTCSRV AELLQMQPLE GTENPTDKPV HVMKLSGKLV 240
  241 NGEKVLALVK MAHSKDGEGI TIKVIARGES DSSVELVVGG IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.154902
Match:	1pzdA
Description:	Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits