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Protein Overview: arc1

General Information:
Name(s) found: arc1 / SPBC14C8.06 [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • ARP2/3 actin-organizing complex subunit Sop2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 377 amino acids

    Gene Ontology:
    Cellular Component: cell division site [IDALink to PubMed article]
    cell tip [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    actin cortical patch [IDALink to PubMed article]
    Arp2/3 protein complex [IDALink to PubMed article]
    Biological Process: regulation of actin filament polymerization [IEA]
    Arp2/3 complex-mediated actin nucleation [IDALink to PubMed article]
    cytokinesis [IMPLink to PubMed article]
    actin cortical patch assembly [ICLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    actin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSQVLHIL PKPSYEHAFN SQRTEFVTTT ATNQVELYEQ DGNGWKHART FSDHDKIVTC  60
   61 VDWAPKSNRI VTCSQDRNAY VYEKRPDGTW KQTLVLLRLN RAATFVRWSP NEDKFAVGSG 120
  121 ARVISVCYFE QENDWWVSKH LKRPLRSTIL SLDWHPNNVL LAAGCADRKA YVLSAYVRDV 180
  181 DAKPEASVWG SRLPFNTVCA EYPSGGWVHA VGFSPSGNAL AYAGHDSSVT IAYPSAPEQP 240
  241 PRALITVKLS QLPLRSLLWA NESAIVAAGY NYSPILLQGN ESGWAHTRDL DAGTSKTSFT 300
  301 HTGNTGEGRE EEGPVSFTAL RSTFRNMDLK GSSQSISSLP TVHQNMIATL RPYAGTPGNI 360
  361 TAFTSSGTDG RVVLWTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..377] PSI-BLAST 44.154902 Arp2/3 complex 41 kDa subunit ARPC1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  3.86142918698875 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • actin filament binding
    		•  2.0735069176589 bayes_pls_golite062009
  • binding
    		•  1.79788997337153 bayes_pls_golite062009
  • dynein binding
    		•  1.69349714290074 bayes_pls_golite062009
  • protein binding
    		•  1.11897341394404 bayes_pls_golite062009
  • myosin binding
    		•  0.989691178611801 bayes_pls_golite062009
  • tubulin binding
    		•  0.968047176592527 bayes_pls_golite062009
  • microtubule binding
    		•  0.834073483714259 bayes_pls_golite062009
  • transporter activity
    		•  0.692270256454453 bayes_pls_golite062009
    		• 0.45054027253231 bayes_pls_golite062009
  • myosin II binding
    		•  0.33142771724387 bayes_pls_golite062009
  • myosin heavy chain kinase activity
    		•  0.231534552000461 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.121183207943714 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle