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Protein Overview: alr1

General Information:
Name(s) found: alr1 / SPCC965.08c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • alanine racemase Alr1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: cellular nitrogen compound metabolic process [IDALink to PubMed article]
    alanine metabolic process [IDALink to PubMed article]
    Molecular Function: alanine racemase activity [IDALink to PubMed article]
    serine racemase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGAKSVIDL HAIAHNYNVA KQMMLQKNPS GHVLAIVKAN AYGHGAVQVA RFLLKHCSSI  60
   61 DGFGVSSIEE ALELRHGGIY NKIVLLEGFF TEEDELKLID DYNFSIIIHS EDQVNSFIKY 120
  121 PFNRPVEIWL KLDSGMNRLG FTPSQFMKFY NLLSNNKNVS NIGKITHFAF ADMLENPEHT 180
  181 LKQWDIFEKS VAHLPGPLSA GGSAIILGWL NTVCTDWLRA GIMLYGISPF LSKNKDSKTP 240
  241 ESVNIKPAMK LVSTIISVKH VDKGQPIGYG GRYVATRDMK LGVVAMGYGD GFPRQVKDGC 300
  301 PVLVNGVKAP IVGRVSMDML TVDLSDIPDV KPGDEVIFWG TPELTVADIA KYCSDTSPYE 360
  361 LVTKLTRRVP LQYTY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 73.0 The 1.45 A crystal structure of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • alanine racemase activity
    		•  2.62362449847897 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  2.31165775898309 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  2.17003836264776 bayes_pls_golite062009
  • catalytic activity
    		•  1.23611818854966 bayes_pls_golite062009
  • binding
    		•  0.911032619175149 bayes_pls_golite062009
  • diaminopimelate decarboxylase activity
    		•  0.492894938678183 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.328743179708914 bayes_pls_golite062009
  • lyase activity
    		•  0.320782640542698 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.14065879331273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle