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Protein Overview: CG11710-PA

General Information:
Name(s) found: CG11710-PA / FBpp0088586 [FlyBase]
Description(s) found:
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  • gi|24643521|ref|NP_728344.1| CG11710, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|22832666|gb|AAN09548.1| CG11710, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|18446879|gb|AAL68032.1| AT04454p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG11710 (CG11710, FBgn0031115). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:20298553..20300626. It has the cytological map location 19D1. Based on sequence similarity, it is predicted to have molecular function</span>: ligand-dependent nuclear receptor binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: regulation of transcription. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG11710-PA translation from_gene[CG11710 CG11710 FBgn0031115] seq_release:3 mol_weight=49040 cds_boundaries:(X:20,100,748..20,102,368[-]) aa_length:436 transcript_info:[CG11710-RA seq_release:3] gene_info:[gene symbol:CG11710 FBgn0031115 gene_boundari [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8T921) AT04454p (CG11710-PA) [DrosMelano7227.FASTAC.txt]
  • CG11710-PA, isoform A [Drosophila melanogaster]gi|18446879|gb|AAL68032.1| AT04454p [Drosophila melanogaster]gi|24643521|ref|NP_728344.1| CG11710-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(20298974..20299021,20299091..20299199,20299260..20299726,20299846..20300464,20300530..20300597); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,G [fly-100309-contam.fasta]
  • AT04454p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG11710-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(20298974..20299021,20299091..20299199,20299260..20299726,20299846..20300464,20300530..20300597); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(20298974..20299021,20299091..20299199,20299260..20299726,20299846..20300464,20300530..20300597); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • AT04454p OS=Drosophila melanogaster GN=CG11710 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(20298974..20299021,20299091..20299199,20299260..20299726,20299846..20300464,20300530..20300597); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548,FlyMine:FBpp0088586,modMine:FBpp0088586; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • AT04454p OS=Drosophila melanogaster GN=CG11710 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(20429503..20429570,20428819..20429437,20428233..20428699,20428064..20428172,20427947..20427994)); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548,FlyMine:FBpp0088586,modMine:FBpp0088586; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(20429503..20429570,20428819..20429437,20428233..20428699,20428064..20428172,20427947..20427994)); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548,FlyMine:FBpp0088586,modMine:FBpp0088586; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VRA1, AT04454p OS=Drosophila melanogaster GN=CG11710 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0088586 type=protein; loc=X:complement(join(20429503..20429570,20428819..20429437,20428233..20428699,20428064..20428172,20427947..20427994)); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548,FlyMine:FBpp0088586,modMine:FBpp0088586; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(20429503..20429570,20428819..20429437,20428233..20428699,20428064..20428172,20427947..20427994)); ID=FBpp0088586; name=CG11710-PA; parent=FBgn0031115,FBtr0089643; dbxref=FlyBase:FBpp0088586,FlyBase_Annotation_IDs:CG11710-PA,GB_protein:AAN09548.1,REFSEQ:NP_728344,GB_protein:AAN09548,UniProt/TrEMBL:Q8T921,FlyMine:FBpp0088586,modMine:FBpp0088586; MD5=b458b4225d168be4cd4e0dffd3ba53f8; length=436; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 436 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: regulation of transcription [IEA]
    Molecular Function: ligand-dependent nuclear receptor binding [ISS]
    zinc ion binding [IEA]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFLRGTLS KCLDCVITDQ MLAAILNIKD DYEFDNYFGN LLSEDNEEHR MFLVNCRRML  60
   61 LSGKQPRNNG KYLSPPLAPT SPNCPKQNIS KGAKGKSGKH VNLYASDGRV QGDTIILKGR 120
  121 RHCDCQAGQH KLINNCLGCG RIVCEQEGSG PCLSCGDPVR TPEEEQQLAK AAREKGGTKS 180
  181 AAKQGKKSTK ELSTQALDKA LAQRDRLLEY DKNSEKRTTV IDDELDYFQE NSVWLSDAER 240
  241 EKFEKLHREM EEVKHGSRMK RKIRVDFAGR ELPEEPTISK EYEQQVISEL AAVSKASGVG 300
  301 SNWSASSVTG HSALTLAPHL NMTKPPVYKP SKESKSWPAP AAGSDWLERT YNRVQDKELL 360
  361 EMQDMRQCLS MHQPWASLLV AGIKKHEGRV WYSEHRGRLW IASTSKEPHA EDIAQMEGFY 420
  421 KIPTLSFQVI IPQAVC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] deduced N/A No confident structure predictions are available.
    2 View Details [105..228] FFAS03 1.16 Crystal Structure of a FYVE-type domain from caspase regulator CARP2
    3 View Details [229..353] MSA 1.038994 View MSA. No confident structure predictions are available.
    4 View Details [354..436] PSI-BLAST 3.69897 No description for 2dp9A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.148252783584283 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle