YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG5877-PB

General Information:
Name(s) found: CG5877-PB / FBpp0073819 [FlyBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG5877 (CG5877, FBgn0030625). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:15187066..15190836. It has the cytological map location 13B4-13B5. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 731 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRNPFQYT LWSNLIMITQ GDMACCNVSA VLRIYEYSMR RMHVGHNDEI TRRFIIKETD  60
   61 VIMLKLFHNC LLFLRQSGHT NWMFALIRLS MELNFPYLTF ECLQAHAGRE KALIGFEEVV 120
  121 LRSGMPMPEI WTRVEQLRQA YCFLPLKDKL ASSTNVFKNK MNAERYFCSD KLVPYVHALK 180
  181 SQNNRLHLVL VVVQLMKLPL IRSASLADKL NPCIEDFGES EAIEMLFAAI VDRHSYAVAS 240
  241 LQYQFDAAMI DLAREMSVTP SYMPHLVGHK LYADTVSNML LKCVEVFIGE ESKRRLLLIL 300
  301 YLRFQKLLIV LHKSMGKLTK KFFKDKRTRM RKLINLTENR NVISFYTEQA LCEIEAKHYR 360
  361 LGFSIISRII TKKSEESSCI SCVDTMHLYL VCAELHIHRG RISKAIGILV SLCLEKHAGV 420
  421 KQTTVYSKEQ VLKGLRNAEK MVRAELKSLD TQPAEMSLEE YFQPNKLLIL LRAICLIEVL 480
  481 NNRRHKEARM WLNDLQNNEF GPEAVKDSER KRFLREQIME IQMLHLRLSF LVFGEVEFYT 540
  541 GFKKIKLHEL LENGLEEFPR NMVFLQLWAS LKSIMWHKQR SRLIRTKAGI ASLAHLVVAI 600
  601 HNRFGIVDTN DKFSKEATRK MVCNRLVSIV ETFLPTNLDR LDVEEEHYRI LRRNSIYWRL 660
  661 YMIALSKTNA SFRRSKEVLI MAMDECPWDK SLLMEGAKVL PVKLASLQDL MTEKEIRIFA 720
  721 MPEEVDVLRG F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..244] FFAS03 1.25 No description for 2ondA was found.
    2 View Details [245..313] PSI-BLAST 26.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [314..731] PSI-BLAST 13.522879 No description for 2ooeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle