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Protein Overview: FBpp0309378, CG5...

General Information:
Name(s) found: FBpp0309378 [FlyBase]
CG5877-PA / FBpp0073818 [FlyBase]
Description(s) found:
Found 25 descriptions.
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  • type=protein; loc=X:join(15187189..15187926,15188370..15190586); ID=FBpp0309378; name=CG5877-PD; parent=FBgn0030625,FBtr0340433; dbxref=FlyBase:FBpp0309378,FlyBase_Annotation_IDs:CG5877-PD; MD5=6ed224d0f5e3d90919214d1741cead7c; length=984; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5877 (CG5877, FBgn0030625). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:15187066..15190836. It has the cytological map location 13B4-13B5. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 984 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFPAYGAG RTSAAGSAKQ TTKPGEEEPS TGGNWKKNES YIKKHVNIAT QGPESDSSSS  60
   61 TEDSEDEADK RKQDDVTKTK NVHRGKTLEF DSSDGFYVDK VGNSSYRNIK TLKKPARPRY 120
  121 KTRMKRLGDG KYNPHDFSRA HSKFSLKRSR YVREKLIADA PSEDEVSRLQ EQLIRTKVLV 180
  181 QQEPEVLDHW LQLHRLLNLN LDKANRLAVA EQQIHSLETA MEHHPSNQQI LRLYTHVANA 240
  241 TYQANEVARR FEKMLKRNPF QYTLWSNLIM ITQGDMACCN VSAVLRIYEY SMRRMHVGHN 300
  301 DEITRRFIIK ETDVIMLKLF HNCLLFLRQS GHTNWMFALI RLSMELNFPY LTFECLQAHA 360
  361 GREKALIGFE EVVLRSGMPM PEIWTRVEQL RQAYCFLPLK DKLASSTNVF KNKMNAERYF 420
  421 CSDKLVPYVH ALKSQNNRLH LVLVVVQLMK LPLIRSASLA DKLNPCIEDF GESEAIEMLF 480
  481 AAIVDRHSYA VASLQYQFDA AMIDLAREMS VTPSYMPHLV GHKLYADTVS NMLLKCVEVF 540
  541 IGEESKRRLL LILYLRFQKL LIVLHKSMGK LTKKFFKDKR TRMRKLINLT ENRNVISFYT 600
  601 EQALCEIEAK HYRLGFSIIS RIITKKSEES SCISCVDTMH LYLVCAELHI HRGRISKAIG 660
  661 ILVSLCLEKH AGVKQTTVYS KEQVLKGLRN AEKMVRAELK SLDTQPAEMS LEEYFQPNKL 720
  721 LILLRAICLI EVLNNRRHKE ARMWLNDLQN NEFGPEAVKD SERKRFLREQ IMEIQMLHLR 780
  781 LSFLVFGEVE FYTGFKKIKL HELLENGLEE FPRNMVFLQL WASLKSIMWH KQRSRLIRTK 840
  841 AGIASLAHLV VAIHNRFGIV DTNDKFSKEA TRKMVCNRLV SIVETFLPTN LDRLDVEEEH 900
  901 YRILRRNSIY WRLYMIALSK TNASFRRSKE VLIMAMDECP WDKSLLMEGA KVLPVKLASL 960
  961 QDLMTEKEIR IFAMPEEVDV LRGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] deduced N/A No confident structure predictions are available.
    2 View Details [171..331] PSI-BLAST 11.39794 No description for 2ooeA was found.
    3 View Details [332..505] deduced N/A No confident structure predictions are available.
    4 View Details [506..984] FFAS03 2.2 No description for 2ooeA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle