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Protein Overview: FBpp0310035, CG9...

General Information:
Name(s) found: FBpp0310035 [FlyBase]
CG9509-PA / FBpp0073795 [FlyBase]
Description(s) found:
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  • gi|7293015|gb|AAF48402.1| CG9509 [Drosophila melanogaster] [NCBI NR]
  • gi|24642051|ref|NP_572983.1| CG9509 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=X:complement(14800704..14802317,14802713..14803039); ID=FBpp0310035; name=CG9509-PB; parent=FBgn0030594,FBtr0343380; dbxref=FlyBase:FBpp0310035,FlyBase_Annotation_IDs:CG9509-PB; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG9509 (CG9509, FBgn0030594). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:14800367..14803097. It has the cytological map location 13A1. Based on sequence similarity, it is predicted to have molecular function</span>: choline dehydrogenase activity. There is experimental evidence that it is involved in the biological process</span>: mesoderm development. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG9509-PA translation from_gene[CG9509 CG9509 FBgn0030594] seq_release:3 mol_weight=70841 cds_boundaries:(X:14,637,688..14,640,020[-]) aa_length:646 transcript_info:[CG9509-RA seq_release:3] gene_info:[gene symbol:CG9509 FBgn0030594 gene_boundaries:(X [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VY04) CG9509 protein [DrosMelano7227.FASTAC.txt]
  • (AE003497) CG9509 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG9509-PA [Drosophila melanogaster]gi|24642051|ref|NP_572983.1| CG9509-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(14800704..14802317,14802713..14803039); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402; [fly-100309-contam.fasta]
  • CG9509-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(14800704..14802317,14802713..14803039); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(14800704..14802317,14802713..14803039); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG9509 OS=Drosophila melanogaster GN=CG9509 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(14800704..14802317,14802713..14803039); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402,FlyMine:FBpp0073795,modMine:FBpp0073795; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG9509 OS=Drosophila melanogaster GN=CG9509 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402,FlyMine:FBpp0073795,modMine:FBpp0073795; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0310035; name=CG9509-PB; parent=FBgn0030594,FBtr0343380; dbxref=GB_protein:AHN59724,REFSEQ:NP_001285254,FlyBase:FBpp0310035,FlyBase_Annotation_IDs:CG9509-PB; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402,FlyMine:FBpp0073795,modMine:FBpp0073795; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0310035; name=CG9509-PB; parent=FBgn0030594,FBtr0343380; dbxref=GB_protein:AHN59724,REFSEQ:NP_001285254,FlyBase:FBpp0310035,FlyBase_Annotation_IDs:CG9509-PB; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG9509, isoform A OS=Drosophila melanogaster GN=CG9509 PE=3 SV=1 [DROME.fasta.20160308]
  • FBpp0073795 type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402,FlyMine:FBpp0073795,modMine:FBpp0073795; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0310035 type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0310035; name=CG9509-PB; parent=FBgn0030594,FBtr0343380; dbxref=GB_protein:AHN59724,REFSEQ:NP_001285254,FlyBase:FBpp0310035,FlyBase_Annotation_IDs:CG9509-PB; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0073795; name=CG9509-PA; parent=FBgn0030594,FBtr0073978; dbxref=FlyBase:FBpp0073795,FlyBase_Annotation_IDs:CG9509-PA,GB_protein:AAF48402.1,REFSEQ:NP_572983,GB_protein:AAF48402,UniProt/TrEMBL:Q9VY04,FlyMine:FBpp0073795,modMine:FBpp0073795; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:complement(join(14908680..14909006,14906671..14908284)); ID=FBpp0310035; name=CG9509-PB; parent=FBgn0030594,FBtr0343380; dbxref=GB_protein:AHN59724,REFSEQ:NP_001285254,FlyBase:FBpp0310035,FlyBase_Annotation_IDs:CG9509-PB,UniProt/TrEMBL:Q9VY04; MD5=4e84c9187f567b0b0af4a4336ce4273f; length=646; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 646 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: mesoderm development [IEP]
    alcohol metabolic process [IEA]
    Molecular Function: FAD binding [IEA]
    choline dehydrogenase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDGGQNLN LDAAAIGPDP CGSVPATPGI GLWSGMVTIL VQTLLSSQCL VSPASQWPVD  60
   61 YVGDLSQPYD FVVIGAGSAG SVVASRLSEN PDWRVLVLEA GGDPPVESEL PALFFGLQHT 120
  121 NFTWNYFTEP SDEACQAMKD GRCYWPRGKM LGGSGGVNAM LYVRGNRRDF DGWAAMGSTG 180
  181 WSYDQVMPFF EKSVTPQGNA THPKGYVTLK PFERKDNDIH QMIIDGGREL GQPYVERFQE 240
  241 GSDTGYSHVP GTVRQGQRMS TGKGYLGAVS KSRPNLHVVK NALVTKLDLD GETVKEVKFE 300
  301 RAGVTHRVKV TKDVVISAGA IDSPALLLRS GIGPSKHLKE LGIPVKLDLP GVGRNLQDHV 360
  361 LVPVFLRLDE GQGEPMTDQA ALDSIYQYLI YRAGPLAAHS TASLVGFINT NASSDGAYPD 420
  421 TENHHMFFQR AHHASLELFT KGLSIQDQYT EVLQEYLKDS HLLCVFVLLS HPAARGELRL 480
  481 KSTDPKVPPI LTSNYLTESE DVATLMRGIR YIESLEQTKA FQDHLAEIAR IPIKECDQIE 540
  541 NYRSEEYWRC YAKYFTVTCY HQSGTVKMGP DYDNEACVSQ RLKVHGLENL RVADASIMPA 600
  601 VVSANTNAAT VMIGERAAHF IQEDYQGEAV GANGGLWVPH MHADEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..646] PSI-BLAST 88.522879 Glucose oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • choline dehydrogenase activity
    		•  4.66965094791663 bayes_pls_golite062009
  • NADPH-adrenodoxin reductase activity
    		•  4.10319574017291 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.3417445147889 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors
    		•  1.47575323060551 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  1.34149762265767 bayes_pls_golite062009
  • glucose dehydrogenase activity
    		•  1.30840878956762 bayes_pls_golite062009
  • transporter activity
    		•  1.29839290134235 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07862908893913 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • monooxygenase activity
    		•  0.72374980280274 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  0.704326257168965 bayes_pls_golite062009
  • binding
    		•  0.694618787489897 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.556967966402473 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH group of donors
    		•  0.442625746935807 bayes_pls_golite062009
  • protein binding
    		•  0.370064403093958 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.31459693204333 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  0.242456601435627 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.170082356807927 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle