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Protein Overview: FBpp0308587, FBp...

General Information:
Name(s) found: FBpp0311461 [FlyBase]
FBpp0308588 [FlyBase]
FBpp0308587 [FlyBase]
FBpp0308586 [FlyBase]
sqh-PA / FBpp0070842 [FlyBase]
Description(s) found:
Found 48 descriptions.
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  • type=protein; loc=X:complement(6117440..6117544,6117618..6118037); ID=FBpp0311461; name=sqh-PE; parent=FBgn0003514,FBtr0345294; dbxref=FlyBase:FBpp0311461,FlyBase_Annotation_IDs:CG3595-PE; MD5=807e3bc581534791d4f6419b52e6812c; length=174; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:complement(6117440..6117544,6117618..6118037); ID=FBpp0308588; name=sqh-PD; parent=FBgn0003514,FBtr0339504; dbxref=FlyBase:FBpp0308588,FlyBase_Annotation_IDs:CG3595-PD; MD5=807e3bc581534791d4f6419b52e6812c; length=174; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:complement(6117440..6117544,6117618..6118037); ID=FBpp0308587; name=sqh-PC; parent=FBgn0003514,FBtr0339503; dbxref=FlyBase:FBpp0308587,FlyBase_Annotation_IDs:CG3595-PC; MD5=807e3bc581534791d4f6419b52e6812c; length=174; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:complement(6117440..6117544,6117618..6118037); ID=FBpp0308586; name=sqh-PB; parent=FBgn0003514,FBtr0339502; dbxref=FlyBase:FBpp0308586,FlyBase_Annotation_IDs:CG3595-PB; MD5=807e3bc581534791d4f6419b52e6812c; length=174; release=r5.56; species=Dmel; [FlyBase]
  • The gene spaghetti squash is referred to in FlyBase by the symbol Dmel\sqh (CG3595, FBgn0003514). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:6117094..6119196. It has the cytological map location 5E1. There is experimental evidence that it has the molecular function</span>: myosin heavy chain binding. There is experimental evidence that it is involved in the biological process</span>: border follicle cell migration; nuclear axial expansion; cytokinesis; imaginal disc-derived wing hair organization; regulation of actin cytoskeleton organization. 21 alleles are reported. The phenotypes of these alleles are annotated with 16 unique terms, many of which group under: organ system; female germline cyst; thoracic segment; egg; adult segment; follicle cell; anatomical structure; portion of tissue; hub cell; extended germ band embryo; actomyosin contractile ring; cell cycle; external compound sense organ. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 174 amino acids

    Gene Ontology:
    Cellular Component: spindle midzone [IDA]
    cytoplasm [IDA]
    cleavage furrow [IDA]
    unconventional myosin complex [ISS][NAS]
    midbody [IDA]
    Biological Process: regulation of actin cytoskeleton organization [IMP]
    ovarian follicle cell development [TAS]
    establishment of planar polarity [NAS]
    ovarian nurse cell to oocyte transport [TAS]
    cytokinesis [IMP][NAS][TAS]
    imaginal disc-derived wing hair organization [IGI]
    nuclear axial expansion [IMP]
    border follicle cell migration [IMP]
    cellularization [NAS]
    Molecular Function: calcium ion binding [IEA][NAS]
    myosin heavy chain binding [IPI]
    ATPase activity, coupled [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKTAGRR ATTKKRAQRA TSNVFAMFDQ AQIAEFKEAF NMIDQNRDGF VEKEDLHDML  60
   61 ASLGKNPTDD YLDGMMNEAP GPINFTMFLT LFGERLQGTD PEDVIKNAFG CFDEENMGVL 120
  121 PEDRLRELLT TMGDRFTDED VDEMYREAPI KNGLFDYLEF TRILKHGAKD KDEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] PSI-BLAST 34.09691 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle